GEO DataSets

(Submitter supplied) Phytophthora spp. encode large sets of effector proteins and distinct populations of small RNAs (sRNAs). Reports suggest that pathogen-derived sRNAs can modulate the expression of plant defense genes. The experiments reported here were designed to shed light on impact of sRNAs in the potato-P. infestans interaction. We used the Argonaute or Ago1 from P. infestans tagged with GFP transformed into the 88069 strain to infect potato cv. more...

Organism:

Phytophthora infestans; Solanum tuberosum

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL21069 GPL25509

12 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Phytophthora infestans

Type:

Other; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:

GPL21069 GPL19416

13 Samples

Download data: TSV, TXT

(Submitter supplied) The plant pathogen Phytophthora infestans encodes four distinct Ago proteins. To identify the sRNA repertoire associated with each PiAgo protein, Ago-sRNA co-immunoprecipitation and sRNA sequencing were carried out. 20-22 nucleotide (nt) sRNAs were identified as the main interaction partners of PiAgo1 and high enrichment of 24-26 nt sRNAs was seen in the PiAgo4-bound sample. The majority of PiAgo-associated sRNAs derived from transposable elements (TEs). more...

Organism:

Phytophthora infestans

Type:

Non-coding RNA profiling by high throughput sequencing; Other

Platform:

GPL21069

11 Samples

Download data: TSV