Comparing gene expression profiles of wild-type and the ∆phcA mutant strains of Ralstonia solanacearum during tomato colonization - - GEO DataSets

Summary

Format

Summary
Summary (text)
Unique Identifier List

Send to:

Choose Destination

File
Clipboard
Collections

Comparing gene expression profiles of wild-type and the ∆phcA mutant strains of Ralstonia solanacearum during tomato colonization

(Submitter supplied) Purpose: To comprehensively identify traits controlled by the PhcA quorum sensing system, and to better understand how this regulator affects pathogen behavior in its natural host environment Method: 21 day-old tomato plants were inoculated with approximately 2000 cells of either wild-type Rs strain GMI1000 or ΔphcA through a cut petiole. After 72 h in a 28°C growth chamber (12h day/night cycle), 0.1 g of stem tissue spanning the petiole was harvested and transferred immediately to a tube containing 900 µl of pre-chilled transcription stop solution (5% [vol/vol] water-saturated phenol in ethanol) and ground using a Powerlyzer. more...

Organism:: Ralstonia solanacearum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23347
6 Samples

Download data: XLSX

Series

Accession:: GSE98074

ID:: 200098074

PubMed Full text in PMC Similar studies SRA Run Selector

Supplemental Content

Related information

PubMed
Related PubMed entries
Full text in PMC
PMC links
Similar studies
Similar studies
BioProject
BioProject links
SRA
Links to Short Read Archive Experiments
Taxonomy
Taxonomy

Search details

Important Links

Recent activity

Clear Turn Off Turn On

Comparing gene expression profiles of wild-type and the ∆phcA mutant strains of ...
Comparing gene expression profiles of wild-type and the ∆phcA mutant strains of Ralstonia solanacearum during tomato colonization
Accession: GSE98074

GEO DataSets
GPL23347[RGSE] (1)
GEO DataSets
PREDICTED: Cygnus olor adhesion G protein-coupled receptor L4 (ADGRL4), transcri...
PREDICTED: Cygnus olor adhesion G protein-coupled receptor L4 (ADGRL4), transcript variant X3, mRNA
gi|2022884839|ref|XM_040565674.1|

Nucleotide
adhesion G protein-coupled receptor L4 isoform X3 [Cygnus olor]
adhesion G protein-coupled receptor L4 isoform X3 [Cygnus olor]
gi|2022884842|ref|XP_040421609.1|

Protein
DUF3810 domain-containing protein [Phocaeicola dorei]
DUF3810 domain-containing protein [Phocaeicola dorei]
gi|495116028|ref|WP_007840845.1|

Protein

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on