GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Drosophila virilis; Drosophila busckii; Drosophila melanogaster

Type:

Genome binding/occupancy profiling by high throughput sequencing; Other

4 related Platforms

17 Samples

Download data: BED, BW, H5

(Submitter supplied) We used an approach combining PacBio data and published Illumina reads to de novo assemble D. busckii contigs. We generated Hi-C data from D. busckii embryos to order these contigs into chromosome-length scaffolds. For D. virilis we generated Hi-C data to order and orient the published Dvir_caf1 scaffolds into chromosome-length assemblies. Furthermore, we compared Hi-C matrices from these two new assemblies with D. more...

Organism:

Drosophila melanogaster; Drosophila busckii; Drosophila virilis

Type:

Other; Third-party reanalysis

4 related Platforms

5 Samples

Download data: BED, FA, GTF, H5, TXT

(Submitter supplied) We used an approach combining PacBio data and published Illumina reads to de novo assemble D. busckii contigs. We generated Hi-C data from D. busckii embryos to order these contigs into chromosome-length scaffolds. For D. virilis we generated Hi-C data to order and orient the published Dvir_caf1 scaffolds into chromosome-length assemblies. Furthermore, we compared Hi-C matrices from these two new assemblies with D. more...

Organism:

Drosophila virilis; Drosophila busckii

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL25633 GPL25632

12 Samples

Download data: BW