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Items: 3

1.

Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA

(Submitter supplied) The spatial and temporal regulation of transcription initiation is pivotal for controlling gene expression. Here, we introduce capped-small RNA-seq (csRNA-seq), which uses total RNA as starting material to detect transcription start sites (TSS) of both stable and unstable RNAs at single-nucleotide resolution. csRNA-seq is highly sensitive to acute changes in transcription and identifies an order of magnitude more regulated transcripts than RNA-seq. more...
Organism:
Nematostella vectensis; Oryza sativa; Homo sapiens; Mus musculus; Neurospora crassa; Capsaspora owczarzaki
Type:
Other
10 related Platforms
40 Samples
Download data: BIGWIG, BW, TXT
Series
Accession:
GSE135498
ID:
200135498

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 4000 (Capsaspora owczarzaki)

Organism:
Capsaspora owczarzaki
1 Series
1 Sample
Download data
Platform
Accession:
GPL27023
ID:
100027023

3.

Capsaspora total RNA-seq

Organism:
Capsaspora owczarzaki
Source name:
whole organism (mixed stages)
Platform:
GPL27023
Series:
GSE135498
Download data
Sample
Accession:
GSM4012760
ID:
304012760

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db=gds|term=GPL27023[Accession]|query=17|qty=7|blobid=MCID_67244b13bcee590f9731ba11|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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