GPL2899[Accession] - GEO DataSets - NCBI

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Select item 2000086311.

Discovery of genes associated with whirling disease infection and resistance in rainbow trout using expression profiling

(Submitter supplied) Whirling disease, caused by the pathogen Myxobolus cerebralis, afflicts several salmonid species. Rainbow trout are particularly susceptible and suffer high mortality rates. The disease is persistent and spreading in hatcheries and natural waters of several countries, including the U.S., and the economic losses associated with whirling disease have been extremely large. In this study, gene expression profiling was conducted for resistant and susceptible rainbow trout strains following pathogen exposure with the primary objective of identifying specific genes associated with whirling disease resistance. more...

Organism:: Salmo salar; Oncorhynchus mykiss

Type:: Expression profiling by array

Platform:: GPL2899
8 Samples

Series

Accession:: GSE8631

ID:: 200008631

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000050912.

Cell line stimulated with recombinant cytokines interleukin-1b and interferon gamma.

(Submitter supplied) Interleukin 1b and interferon g are two cytokines that are central to the inflammatory response. They both have a broad range of activity, each directing the immune response to be towards either the innate response (IL-1b and IFN-g) or the cellular response (IFN-g), however invivo there is a lot of subtle interactions. Microarray analysis has been used to characterize the transcriptional response to recombinant rainbow trout IL-1b and IFN-g in a rainbow trout macrophage cell line RTS-11. more...

Organism:: Oncorhynchus mykiss; Salmo salar

Type:: Expression profiling by array

Platform:: GPL2899
12 Samples

Series

Accession:: GSE5091

ID:: 200005091

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000069243.

Salmonid host response to Hematopoietic Necrosis virus: cellular receptors, viral control and novel pathways of defence

(Submitter supplied) The transcriptional response of Atlantic salmon (Salmo salar) to infectious hematopoietic necrosis (IHN) virus was elucidated using 16,008 gene GRASP cDNA microarrays. S. salar were exposed to the IHN virus in a waterborne challenge, and kidney samples from five fish sampled on each of days 0, 1, 5 and 9 were analysed in the microarray study. Validation of nine of the significant genes was conducted on fish sampled on alternate days from 1 to 13 and compared to the unchallenged control sampled on day 0. more...

Organism:: Oncorhynchus mykiss; Salmo salar

Type:: Expression profiling by array

Platforms:: GPL2899 GPL3976
20 Samples

Download data: TIFF

Series

Accession:: GSE6924

ID:: 200006924

Analyze with GEO2R

Select item 2000047874.

Microarray gene expression analysis in atrophying rainbow trout muscle: An unique non-mammalian muscle degradation model

(Submitter supplied) Muscle atrophy is a physiological response to diverse physiological and pathological conditions that trigger muscle deterioration through distinct cellular stimuli. Despite different physiological signals, the resulting biochemical changes in atrophying muscle share many common cascades. Muscle deterioration as a physiological response to the energetic demands of fish spawning represents a unique model for studying the mechanisms of muscle degradation in non-mammalian animals. more...

Organism:: Salmo salar; Oncorhynchus mykiss

Type:: Expression profiling by array

Platform:: GPL2899
5 Samples

Series

Accession:: GSE4787

ID:: 200004787

PubMed Similar studies Analyze with GEO2R

Select item 2000047905.

The effects of chronic immune stimulation on muscle growth in rainbow trout

(Submitter supplied) Successful production of aquaculture species depends on efficient growth with low susceptibility to disease. Therefore, selection programs have focused on rapid growth combined with disease resistance. However, chronic immune stimulation diminishes muscle growth (a syndrome referred to as cachexia), and decreases growth efficiency in production animals, including rainbow trout. In mammals, recent results show that increased levels of pro-inflammatory cytokines, such as those seen during an immune assault, specifically target myosin and MyoD and inhibit muscle growth. more...

Organism:: Oncorhynchus mykiss; Salmo salar

Type:: Expression profiling by array

Platform:: GPL2899
4 Samples

Series

Accession:: GSE4790

ID:: 200004790

PubMed Similar studies Analyze with GEO2R

Select item 2000035226.

Gene Expression Profiling Following DNA Vaccination of Rainbow Trout against Infectious Hematopoietic Necrosis Virus

(Submitter supplied) The Infectious Hematopoietic Necrosic Virus (IHNV) DNA vaccine is based on the viral glycoprotein gene (G gene) and induces a non-specific anti-viral immune response and long-term specific immunity against IHNV in salmonid fishes. This study characterized gene expression responses associated with the early anti-viral response. Homozygous rainbow trout were injected intra-muscularly (I.M.) with vector DNA or the IHNV DNA vaccine. more...

Organism:: Oncorhynchus mykiss; Salmo salar

Type:: Expression profiling by array

Platform:: GPL2899
10 Samples

Download data: TXT

Series

Accession:: GSE3522

ID:: 200003522

PubMed Similar studies Analyze with GEO2R

Select item 1000028997.

GRASP salmonid array, 16k v. 1.0, March 2004

(Submitter supplied) 16k salmonid cDNA microarray from GRASP including features primarily from Atlantic salmon and rainbow trout Protocol: details on the manufacture and testing of the 16k v. 1.0 array may be found in: von Schalburg KR, Rise ML, Cooper GA, Brown GD, Gibbs RA, Nelson CC, Davidson WS, Koop BF. 2005. Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray. BMC Genomics 6: 126 additional information may be found on the GRASP website: http://web.uvic.ca/cbr/grasp/

Organism:: Oncorhynchus mykiss; Salmo salar

6 Series
48 Samples

Platform

Accession:: GPL2899

ID:: 100002899

Select item 3002062268.

GRASP array Skin 24hr Post-Exposure Trout Lodge Rep4

Organism:: Oncorhynchus mykiss

Source name:: Rainbow trout (Trout Lodge strain) skin exposed to M. cerebralis pathogen (channel 1) Rainbow trout (Trout Lodge strain) skin unexposed control (channel 2)

Platform:: GPL2899
Series:: GSE8631

Sample

Accession:: GSM206226

ID:: 300206226

Select item 3002062259.

GRASP array Skin 24hr Post-Exposure Trout Lodge Rep2

Organism:: Oncorhynchus mykiss

Source name:: Rainbow trout (Trout Lodge strain) skin exposed to M. cerebralis pathogen (channel 1) Rainbow trout (Trout Lodge strain) skin unexposed control (channel 2)

Platform:: GPL2899
Series:: GSE8631

Sample

Accession:: GSM206225

ID:: 300206225

Select item 30020622410.

GRASP array Skin 24hr Post-Exposure Trout Lodge Rep3

Organism:: Oncorhynchus mykiss

Source name:: Rainbow trout (Trout Lodge strain) skin unexposed control (channel 1) Rainbow trout (Trout Lodge strain) skin exposed to M. cerebralis pathogen (channel 2)

Platform:: GPL2899
Series:: GSE8631

Sample

Accession:: GSM206224

ID:: 300206224

Select item 30020622311.

GRASP array Skin 24hr Post-Exposure Trout Lodge Rep1

Organism:: Oncorhynchus mykiss

Source name:: Rainbow trout (Trout Lodge strain) skin unexposed control (channel 1) Rainbow trout (Hofer strain) skin exposed to M. cerebralis pathogen (channel 2)

Platform:: GPL2899
Series:: GSE8631

Sample

Accession:: GSM206223

ID:: 300206223

Select item 30020622212.

GRASP array Skin 24hr Post-Exposure Hofer Rep3

Organism:: Oncorhynchus mykiss

Source name:: Rainbow trout (Hofer strain) skin unexposed control (channel 1) Rainbow trout (Hofer strain) skin exposed to M. cerebralis pathogen (channel 2)

Platform:: GPL2899
Series:: GSE8631

Sample

Accession:: GSM206222

ID:: 300206222

Select item 30020622113.

GRASP array Skin 24hr Post-Exposure Hofer Rep4

Organism:: Oncorhynchus mykiss

Source name:: Rainbow trout (Hofer strain) skin exposed to M. cerebralis pathogen (channel 1) Rainbow trout (Hofer strain) skin unexposed control (channel 2)

Platform:: GPL2899
Series:: GSE8631

Sample

Accession:: GSM206221

ID:: 300206221

Select item 30020622014.

GRASP array Skin 24hr Post-Exposure Hofer Rep2

Organism:: Oncorhynchus mykiss

Source name:: Rainbow trout (Hofer strain) skin exposed to M. cerebralis pathogen (channel 1) Rainbow trout (Hofer strain) skin unexposed control (channel 2)

Platform:: GPL2899
Series:: GSE8631

Sample

Accession:: GSM206220

ID:: 300206220

Select item 30020617115.

GRASP array Skin 24hr Post-Exposure Hofer Rep1

Organism:: Oncorhynchus mykiss

Source name:: Rainbow trout (Hofer strain) skin unexposed control (channel 1) Rainbow trout (Hofer strain) skin exposed to M. cerebralis pathogen (channel 2)

Platform:: GPL2899
Series:: GSE8631

Sample

Accession:: GSM206171

ID:: 300206171

Select item 30011486816.

RTS II cell line stimulation 12 (SsamcellINF12a)

Organism:: Oncorhynchus mykiss

Source name:: RTS II cells Non stimulated (channel 1) RTS II cells stimulated with recombinant interferon gamma (channel 2)

Platform:: GPL2899
Series:: GSE5091

Sample

Accession:: GSM114868

ID:: 300114868

Select item 30011486717.

RTS II cell line stimulation 11 (SsamcellINF11a)

Organism:: Oncorhynchus mykiss

Source name:: RTS II cells Non stimulated (channel 1) RTS II cells stimulated with recombinant interferon gamma (channel 2)

Platform:: GPL2899
Series:: GSE5091

Sample

Accession:: GSM114867

ID:: 300114867

Select item 30011486618.

RTS II cell line stimulation 10 (SsamcellINF10b)

Organism:: Oncorhynchus mykiss

Source name:: RTS II cells Non stimulated (channel 1) RTS II cells stimulated with recombinant interferon gamma (channel 2)

Platform:: GPL2899
Series:: GSE5091

Sample

Accession:: GSM114866

ID:: 300114866

Select item 30011486519.

RTS II cell line stimulation 9 (SsamcellINF9a)

Organism:: Oncorhynchus mykiss

Source name:: RTS II cells stimulated with recombinant interferon gamma (channel 1) RTS II cells Non stimulated (channel 2)

Platform:: GPL2899
Series:: GSE5091

Sample

Accession:: GSM114865

ID:: 300114865

Select item 30011486420.

RTS II cell line stimulation 8 (SsamcellINF8a)

Organism:: Oncorhynchus mykiss

Source name:: RTS II cells stimulated with recombinant interferon gamma (channel 1) RTS II cells Non stimulated (channel 2)

Platform:: GPL2899
Series:: GSE5091

Sample

Accession:: GSM114864

ID:: 300114864

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GPL2899[Accession] (55)
GEO DataSets
cytochrome oxidase subunit 1, partial (mitochondrion) [Bethylidae sp. BIOUG05647...
cytochrome oxidase subunit 1, partial (mitochondrion) [Bethylidae sp. BIOUG05647-D09]
gi|1384012067|gb|AWD78327.1|

Protein
methyl-CpG-binding domain protein 1 isoform 96 [Homo sapiens]
methyl-CpG-binding domain protein 1 isoform 96 [Homo sapiens]
gi|2180230786|ref|NP_001386874.1|

Protein
photosystem II protein D1, partial (chloroplast) [Anthaenantia villosa]
photosystem II protein D1, partial (chloroplast) [Anthaenantia villosa]
gi|1496297992|gb|AYN75408.1|

Protein
MAG: hypothetical protein COU49_00125 [Candidatus Nomurabacteria bacterium CG10_...
MAG: hypothetical protein COU49_00125 [Candidatus Nomurabacteria bacterium CG10_big_fil_rev_8_21_14_0_10_35_16]
gi|1277170483|gb|PIR68619.1||gnl|WG Q|COU49_00125

Protein

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