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Items: 8

1.

Transcriptome-wide mapping of RNA secondary structure ensembles in a living cell

(Submitter supplied) RNA molecules can populate an ensemble of alternative structural conformations, but the true extent of the RNA secondary structure folding space of a living cell has never been explored. We here generated the first transcriptome-wide maps of RNA secondary structure ensembles in Escherichia coli, both at physiological temperature and upon cold-shock. Our analysis revealed hundreds of novel putative conserved RNA switches.
Organism:
Escherichia coli
Type:
Other
Platforms:
GPL33918 GPL33919
10 Samples
Download data: WIG
Series
Accession:
GSE247244
ID:
200247244

2.

DNBSEQ-G400 (Escherichia coli)

Organism:
Escherichia coli
1 Series
6 Samples
Download data
Platform
Accession:
GPL33918
ID:
100033918

3.

DMS-MaPseq of E. coli TOP10, in vitro refolded, 37°C (mRNA)

Organism:
Escherichia coli
Source name:
TOP10
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM8335534
ID:
308335534

SRA Run Selector

4.

DMS-MaPseq of E. coli DH5a, in vitro refolded, 37°C (mRNA)

Organism:
Escherichia coli
Source name:
DH5a
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM8335533
ID:
308335533

SRA Run Selector

5.

DMS-MaPseq of E. coli TOP10, exponential phase, 10°C cold-shock (mRNA)

Organism:
Escherichia coli
Source name:
TOP10
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885841
ID:
307885841

SRA Run Selector

6.

DMS-MaPseq of E. coli DH5a, exponential phase, 10°C cold-shock (mRNA)

Organism:
Escherichia coli
Source name:
DH5a
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885840
ID:
307885840

SRA Run Selector

7.

DMS-MaPseq of E. coli TOP10, exponential phase, 37°C (mRNA)

Organism:
Escherichia coli
Source name:
TOP10
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885839
ID:
307885839

SRA Run Selector

8.

DMS-MaPseq of E. coli DH5a, exponential phase, 37°C (mRNA)

Organism:
Escherichia coli
Source name:
DH5a
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885838
ID:
307885838

SRA Run Selector

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