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Items: 1 to 20 of 24

1.

Fine-scale contemporary recombination variation and its fitness consequences in adaptively diverging stickleback fish [ATAC-Seq]

(Submitter supplied) Despite deep evolutionary conservation, recombination varies greatly across the genome, among individuals, sexes and populations and can be a major evolutionary force in the wild. Yet this variation in recombination and its impact on adaptively diverging populations is not well understood. To elucidate the nature and potential consequences of recombination rate variation, we characterized fine-scale recombination landscapes by combining pedigrees, functional genomics and field fitness measurements in an adaptively divergent pair of marine and freshwater threespine stickleback populations from River Tyne, Scotland. more...
Organism:
Gasterosteus aculeatus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL34145
12 Samples
Download data: BEDGRAPH, NARROWPEAK
Series
Accession:
GSE254559
ID:
200254559
2.

Fine-scale contemporary recombination variation and its fitness consequences in adaptively diverging stickleback fish

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Gasterosteus aculeatus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL34146 GPL34145
22 Samples
Download data: BED, BEDGRAPH, NARROWPEAK
Series
Accession:
GSE254561
ID:
200254561
3.

Fine-scale contemporary recombination variation and its fitness consequences in adaptively diverging stickleback fish [ChIP-Seq]

(Submitter supplied) Despite deep evolutionary conservation, recombination varies greatly across the genome, among individuals, sexes and populations and can be a major evolutionary force in the wild. Yet this variation in recombination and its impact on adaptively diverging populations is not well understood. To elucidate the nature and potential consequences of recombination rate variation, we characterized fine-scale recombination landscapes by combining pedigrees, functional genomics and field fitness measurements in an adaptively divergent pair of marine and freshwater threespine stickleback populations from River Tyne, Scotland. more...
Organism:
Gasterosteus aculeatus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL34145 GPL34146
10 Samples
Download data: BED, BEDGRAPH, NARROWPEAK
Series
Accession:
GSE254557
ID:
200254557
4.

Illumina HiSeq 3000 (Gasterosteus aculeatus)

Organism:
Gasterosteus aculeatus
3 Series
20 Samples
Download data
Platform
Accession:
GPL34145
ID:
100034145
5.

ATACseq_sticklebackPrimarySpermatocytesGenomicControl_FreshwaterPool3

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045950
ID:
308045950
6.

ATACseq_sticklebackPrimarySpermatocytesGenomicControl_FreshwaterPool2

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045949
ID:
308045949
7.

ATACseq_sticklebackPrimarySpermatocytesGenomicControl_FreshwaterPool1

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045948
ID:
308045948
8.

ATACseq_sticklebackPrimarySpermatocytesGenomicControl_MarinePool3

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045947
ID:
308045947
9.

ATACseq_sticklebackPrimarySpermatocytesGenomicControl_MarinePool2

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045946
ID:
308045946
10.

ATACseq_sticklebackPrimarySpermatocytesGenomicControl_MarinePool1

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045945
ID:
308045945
11.

ATACseq_sticklebackPrimarySpermatocytesATAC_FreshwaterPool3

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045944
ID:
308045944
12.

ATACseq_sticklebackPrimarySpermatocytesATAC_FreshwaterPool2

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045943
ID:
308045943
13.

ATACseq_sticklebackPrimarySpermatocytesATAC_FreshwaterPool1

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045942
ID:
308045942
14.

ATACseq_sticklebackPrimarySpermatocytesATAC_MarinePool3

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045941
ID:
308045941
15.

ATACseq_sticklebackPrimarySpermatocytesATAC_MarinePool2

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045940
ID:
308045940
16.

ATACseq_sticklebackPrimarySpermatocytesATAC_MarinePool1

Organism:
Gasterosteus aculeatus
Source name:
primary spermatocytes
Platform:
GPL34145
Series:
GSE254559 GSE254561
Download data
Sample
Accession:
GSM8045939
ID:
308045939
17.

ChIPseq_H3K4me3_Input_sticklebackTestesPool_Marine

Organism:
Gasterosteus aculeatus
Source name:
TestesPool
Platform:
GPL34145
Series:
GSE254557 GSE254561
Download data: BEDGRAPH
Sample
Accession:
GSM8045892
ID:
308045892
18.

ChIPseq_H3K4me3_sticklebackTestesPool_Marine

Organism:
Gasterosteus aculeatus
Source name:
TestesPool
Platform:
GPL34145
Series:
GSE254557 GSE254561
Download data: BEDGRAPH, NARROWPEAK
Sample
Accession:
GSM8045891
ID:
308045891
19.

ChIPseq_DMC1_KEInput_sticklebackLiverPool_Freshwater

Organism:
Gasterosteus aculeatus
Source name:
LiverPool
Platform:
GPL34145
Series:
GSE254557 GSE254561
Download data: BED, BEDGRAPH
Sample
Accession:
GSM8045888
ID:
308045888
20.

ChIPseq_DMC1_sticklebackLiverPool_Freshwater

Organism:
Gasterosteus aculeatus
Source name:
LiverPool
Platform:
GPL34145
Series:
GSE254557 GSE254561
Download data: BED, BEDGRAPH, NARROWPEAK
Sample
Accession:
GSM8045887
ID:
308045887
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