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Items: 10

1.

OCEAN-C: mapping hubs of open chromatin interactions across the genome reveals gene regulatory networks

(Submitter supplied) We develop a method called open chromatin enrichment and network Hi-C (OCEAN-C) for antibody-independent mapping of global open chromatin interactions. By integrating FAIRE-seq and Hi-C, OCEAN-C detects open chromatin interactions enriched by active cis-regulatory elements. We identify more than 10,000 hubs of open chromatin interactions (HOCIs) in human cells, which are mainly active promoters and enhancers bound by many DNA-binding proteins and form interaction networks crucial for gene transcription. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other
Platform:
GPL20795
8 Samples
Download data: BED
Series
Accession:
GSE100832
ID:
200100832

PubMed Full text in PMC Similar studies SRA Run Selector

2.

HiSeq X Ten (Homo sapiens)

Organism:
Homo sapiens
1960 Series
34191 Samples
Download data
Platform
Accession:
GPL20795
ID:
100020795

3.

OCEAN-C GM12878 rep2

Organism:
Homo sapiens
Source name:
Normal
Platform:
GPL20795
Series:
GSE100832
Download data: BED
Sample
Accession:
GSM2694186
ID:
302694186

SRA Run Selector

4.

OCEAN-C GM12878 rep1

Organism:
Homo sapiens
Source name:
Normal
Platform:
GPL20795
Series:
GSE100832
Download data: BED
Sample
Accession:
GSM2694185
ID:
302694185

SRA Run Selector

5.

OCEAN-C U266

Organism:
Homo sapiens
Source name:
Multiple myeloma
Platform:
GPL20795
Series:
GSE100832
Download data: BED
Sample
Accession:
GSM2694184
ID:
302694184

SRA Run Selector

6.

OCEAN-C RPMI-8226

Organism:
Homo sapiens
Source name:
Multiple myeloma
Platform:
GPL20795
Series:
GSE100832
Download data: BED
Sample
Accession:
GSM2694183
ID:
302694183

SRA Run Selector

7.

FAIRE-seq GM12878

Organism:
Homo sapiens
Source name:
Normal
Platform:
GPL20795
Series:
GSE100832
Download data: BED
Sample
Accession:
GSM2694182
ID:
302694182

SRA Run Selector

8.

FAIRE-seq U266

Organism:
Homo sapiens
Source name:
Multiple myeloma
Platform:
GPL20795
Series:
GSE100832
Download data: BED
Sample
Accession:
GSM2694181
ID:
302694181

SRA Run Selector

9.

FAIRE-seq RPMI-8226

Organism:
Homo sapiens
Source name:
Multiple myeloma
Platform:
GPL20795
Series:
GSE100832
Download data: BED
Sample
Accession:
GSM2694180
ID:
302694180

SRA Run Selector

10.

Hi-C GM12878

Organism:
Homo sapiens
Source name:
Normal
Platform:
GPL20795
Series:
GSE100832
Download data: BED
Sample
Accession:
GSM2694179
ID:
302694179

SRA Run Selector

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