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Items: 10

1.

3D genome landscape of Epstein-Barr Virus oncoproteins and virus activated NF-kB in lymphoblastoid cells

(Submitter supplied) Epstein-Barr Virus (EBV) encoded Nuclear Antigens (EBNAs) and virus activated NF-kB subunits mostly bind to enhancers in EBV transformed lymphoblastoid cells lines (LCLs). Using LCL 3D genome organization map that links EBV enhancers to promoters, we built the most comprehensive virus regulome. EBV regulome contained 1992 genes and enhancers directly linked to them. ~30% of genes essential for LCL growth were linked to EBV enhancers. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL18573
8 Samples
Download data: BAM, TDF
Series
Accession:
GSE101426
ID:
200101426

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12490 Series
340905 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

31-RBL-Donor-1-WT-D7

Organism:
Homo sapiens
Source name:
Primary B cells infected with EBV
Platform:
GPL18573
Series:
GSE101426
Download data: BAM, TDF
Sample
Accession:
GSM2702719
ID:
302702719

SRA Run Selector

4.

30-RBL-Donor-1-WT-D5

Organism:
Homo sapiens
Source name:
Primary B cells infected with EBV
Platform:
GPL18573
Series:
GSE101426
Download data: BAM, TDF
Sample
Accession:
GSM2702718
ID:
302702718

SRA Run Selector

5.

29-RBL-Donor-1-WT-D2

Organism:
Homo sapiens
Source name:
Primary B cells infected with EBV
Platform:
GPL18573
Series:
GSE101426
Download data: BAM, TDF
Sample
Accession:
GSM2702717
ID:
302702717

SRA Run Selector

6.

28-RBL-Donor-1-WT-D1

Organism:
Homo sapiens
Source name:
Primary B cells infected with EBV
Platform:
GPL18573
Series:
GSE101426
Download data: BAM, TDF
Sample
Accession:
GSM2702716
ID:
302702716

SRA Run Selector

7.

27-RBL-Donor-1-P3-D5

Organism:
Homo sapiens
Source name:
Primary B cells infected with EBV
Platform:
GPL18573
Series:
GSE101426
Download data: BAM, TDF
Sample
Accession:
GSM2702715
ID:
302702715

SRA Run Selector

8.

26-RBL-Donor-1-P3-D2

Organism:
Homo sapiens
Source name:
Primary B cells infected with EBV
Platform:
GPL18573
Series:
GSE101426
Download data: BAM, TDF
Sample
Accession:
GSM2702714
ID:
302702714

SRA Run Selector

9.

25-RBL-Donor-1-P3-D1

Organism:
Homo sapiens
Source name:
Primary B cells infected with EBV
Platform:
GPL18573
Series:
GSE101426
Download data: BAM, TDF
Sample
Accession:
GSM2702713
ID:
302702713

SRA Run Selector

10.

24-RBL-Donor-1-D0

Organism:
Homo sapiens
Source name:
Primary B cells
Platform:
GPL18573
Series:
GSE101426
Download data: BAM, TDF
Sample
Accession:
GSM2702712
ID:
302702712

SRA Run Selector

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db=gds|term=GSE101426[Accession]|query=1|qty=2|blobid=MCID_67130218c7d3ca20d53f5dcd|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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