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Items: 11

1.

Non-coding regions are the main source of tumor-specific antigens [mouse]

(Submitter supplied) Purpose: Tumor-specific antigens (TSAs) represent ideal targets for cancer immunotherapy, but very few of them have been identified. Therefore, the goal of this study was to develop a novel approach, combining RNA-Sequencing and mass spectrometry, to enlarge the landscape of actionable TSAs in two murine cell lines, namely EL4 and CT26 cells. Methods: We performed RNA-Sequencing on both tumor cell lines (unreplicated) as well as on the syngeneic mature medullary thymic epithelial cells (mTEChi, in triplicate), using either the Illumina HiSeq200 or the Illumina NextSeq 500. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL13112 GPL19057
8 Samples
Download data: TSV
Series
Accession:
GSE111092
ID:
200111092

PubMed Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Mus musculus)

Organism:
Mus musculus
10272 Series
295627 Samples
Download data
Platform
Accession:
GPL19057
ID:
100019057

3.

Illumina HiSeq 2000 (Mus musculus)

Organism:
Mus musculus
8346 Series
188700 Samples
Download data
Platform
Accession:
GPL13112
ID:
100013112

4.

BALB-c_mTEChi_3

Organism:
Mus musculus
Source name:
mature medullary thymic epithelial cells
Platform:
GPL19057
Series:
GSE111092 GSE113992
Download data
Sample
Accession:
GSM3022112
ID:
303022112

SRA Run Selector

5.

BALB-c_mTEChi_2

Organism:
Mus musculus
Source name:
mature medullary thymic epithelial cells
Platform:
GPL19057
Series:
GSE111092 GSE113992
Download data
Sample
Accession:
GSM3022111
ID:
303022111

SRA Run Selector

6.

BALB-c_mTEChi_1

Organism:
Mus musculus
Source name:
mature medullary thymic epithelial cells
Platform:
GPL19057
Series:
GSE111092 GSE113992
Download data
Sample
Accession:
GSM3022110
ID:
303022110

SRA Run Selector

7.

mTEC_hi_3

Organism:
Mus musculus
Source name:
mature medullary thymic epithelial cells
Platform:
GPL13112
Series:
GSE111092 GSE113992
Download data
Sample
Accession:
GSM3022109
ID:
303022109

SRA Run Selector

8.

mTEC_hi_2

Organism:
Mus musculus
Source name:
mature medullary thymic epithelial cells
Platform:
GPL13112
Series:
GSE111092 GSE113992
Download data
Sample
Accession:
GSM3022108
ID:
303022108

SRA Run Selector

9.

mTEC_hi_1

Organism:
Mus musculus
Source name:
mature medullary thymic epithelial cells
Platform:
GPL13112
Series:
GSE111092 GSE113992
Download data
Sample
Accession:
GSM3022107
ID:
303022107

SRA Run Selector

10.

CT26

Organism:
Mus musculus
Source name:
tumor cell line
Platform:
GPL13112
Series:
GSE111092 GSE113992
Download data
Sample
Accession:
GSM3022106
ID:
303022106

SRA Run Selector

11.

EL4

Organism:
Mus musculus
Source name:
tumor cell line
Platform:
GPL13112
Series:
GSE111092 GSE113992
Download data
Sample
Accession:
GSM3022105
ID:
303022105

SRA Run Selector

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