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Items: 1 to 20 of 42

1.

Endodermal maternal transcription factors establish super enhancers during zygotic genome activation

(Submitter supplied) We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial ectopic expression of vegt and otx1 RNA in the putative ectoderm; and combinatorial knock-down of vegt and otx1 in the putative endoderm both followed by transcriptomic analysis (RNA-seq). We performed chromatin immunoprecipitation combined with high throughput sequencing (ChIP-seq) to assess the chromatin association of Vegt and Otx1 prior to zygotic gene activation. more...
Organism:
Xenopus tropicalis
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL23182 GPL21875
39 Samples
Download data: BED, TXT
Series
Accession:
GSE118024
ID:
200118024
2.

Illumina HiSeq 4000 (Xenopus tropicalis)

Organism:
Xenopus tropicalis
22 Series
319 Samples
Download data
Platform
Accession:
GPL23182
ID:
100023182
3.

Illumina HiSeq 2500 (Xenopus tropicalis)

Organism:
Xenopus tropicalis
24 Series
370 Samples
Download data
Platform
Accession:
GPL21875
ID:
100021875
4.

Stage 10.5 vegetal H3K4me1 ChIP-seq replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3638164
ID:
303638164
5.

Stage 10.5 vegetal H3K4me1 ChIP-seq replicate 1

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3638163
ID:
303638163
6.

Stage 8 Otx1 ChIP-seq replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317450
ID:
303317450
7.

Stage 8 Vegt ChIP-seq replicate 1

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317447
ID:
303317447
8.

Stage 10 vegetal mass Double MO replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317446
ID:
303317446
9.

Stage 10 vegetal mass Otx1 MO replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317445
ID:
303317445
10.

Stage 10 vegetal mass Vegt MO replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317444
ID:
303317444
11.

Stage 10 vegetal mass uninjected replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317443
ID:
303317443
12.

Stage 10 vegetal mass Double MO replicate 1

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317442
ID:
303317442
13.

Stage 10 vegetal mass Otx1 MO replicate 1

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317441
ID:
303317441
14.

Stage 10 vegetal mass Vegt MO replicate 1

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317440
ID:
303317440
15.

Stage 10 vegetal mass uninjected replicate 1

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317439
ID:
303317439
16.

Animal cap ectopic expression Vegt 100 ng, Otx1 100 ng replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317438
ID:
303317438
17.

Animal cap ectopic expression Vegt 100 ng, Otx1 50 ng replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317437
ID:
303317437
18.

Animal cap ectopic expression Vegt 100 ng, Otx1 25 ng replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317436
ID:
303317436
19.

Animal cap ectopic expression Vegt 500 ng, Otx1 0 ng replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317435
ID:
303317435
20.

Animal cap ectopic expression Vegt 200 ng, Otx1 0 ng replicate 2

Organism:
Xenopus tropicalis
Source name:
Xenopus tropicalis embryo
Platform:
GPL23182
Series:
GSE118024
Download data
Sample
Accession:
GSM3317434
ID:
303317434
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Supplemental Content

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