GSE128335[Accession] - GEO DataSets

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Items: 15

Select item 2001283351.

Niche-Specific Re-Programming of Epigenetic Landscapes Drives Myeloid Cell Diversity in NASH [ATAC-seq]

(Submitter supplied) Tissue resident macrophages and recruited monocyte-derived macrophages contribute to host defense but also play pathological roles in a diverse range of human diseases. Multiple macrophage phenotypes are often represented in a diseased tissue, but we lack a deep understanding of the mechanisms that control diversification. Here we use a combination of genetic, genomic, and imaging approaches to investigate the origins and epigenetic trajectories of hepatic myeloid cells during a diet-induced model of nonalcoholic steatohepatitis (NASH). more...

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL19057 GPL21103
12 Samples

Download data: TXT

Series

Accession:: GSE128335

ID:: 200128335

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000211032.

Illumina HiSeq 4000 (Mus musculus)

Organism:: Mus musculus

6570 Series
141121 Samples

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Platform

Accession:: GPL21103

ID:: 100021103

Select item 1000190573.

Illumina NextSeq 500 (Mus musculus)

Organism:: Mus musculus

10242 Series
295241 Samples

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Platform

Accession:: GPL19057

ID:: 100019057

Select item 3045123254.

ATAC_KN-RM_rep2

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL19057
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512325

ID:: 304512325

SRA Run Selector

Select item 3045123245.

ATAC_KN-RM_rep1

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL19057
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512324

ID:: 304512324

SRA Run Selector

Select item 3045123226.

ATAC_KC-N_rep1

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL19057
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512322

ID:: 304512322

SRA Run Selector

Select item 3045123297.

ATAC_Ly6CLo-RM_rep2

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512329

ID:: 304512329

SRA Run Selector

Select item 3045123288.

ATAC_Ly6CLo-RM_rep1

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512328

ID:: 304512328

SRA Run Selector

Select item 3045123279.

ATAC_Ly6CHi-RM_rep2

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512327

ID:: 304512327

SRA Run Selector

Select item 30451232610.

ATAC_Ly6CHi-RM_rep1

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512326

ID:: 304512326

SRA Run Selector

Select item 30451232311.

ATAC_KC-N_rep2

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512323

ID:: 304512323

SRA Run Selector

Select item 30451232112.

ATAC_KC-H_rep2

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512321

ID:: 304512321

SRA Run Selector

Select item 30451232013.

ATAC_KC-H_rep1

Organism:: Mus musculus

Source name:: Sorted hepatic macrophages

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512320

ID:: 304512320

SRA Run Selector

Select item 30451231914.

ATAC_Blood-Ly6CHi-NASH_rep2

Organism:: Mus musculus

Source name:: Sorted peripheral monocytes

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512319

ID:: 304512319

SRA Run Selector

Select item 30451231815.

ATAC_Blood-Ly6CHi-NASH_rep1

Organism:: Mus musculus

Source name:: Sorted peripheral monocytes

Platform:: GPL21103
Series:: GSE128335 GSE128338

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Sample

Accession:: GSM4512318

ID:: 304512318

SRA Run Selector

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GSE128335[Accession] (15)
GEO DataSets
PREDICTED: Rattus norvegicus deoxynucleotidyltransferase, terminal, interacting ...
PREDICTED: Rattus norvegicus deoxynucleotidyltransferase, terminal, interacting protein 1 (Dnttip1), transcript variant X5, misc_RNA
gi|2678927057|ref|XR_005501767.2|

Nucleotide
Ozomelis trifida voucher MF227 maturase K (matK) gene, partial cds; chloroplast
Ozomelis trifida voucher MF227 maturase K (matK) gene, partial cds; chloroplast
gi|1198273747|gnl|uoguelph|VPSBC446 atK|gb|KX676909.1|

Nucleotide
ATPase subunit 6 (mitochondrion) [Rhamdia cinerascens]
ATPase subunit 6 (mitochondrion) [Rhamdia cinerascens]
gi|23629850|gb|AAK70056.1|

Protein
Saccharomyces cerevisiae S288C TFIIH/NER complex subunit TFB1 (TFB1), partial mR...
Saccharomyces cerevisiae S288C TFIIH/NER complex subunit TFB1 (TFB1), partial mRNA
gi|398366470|ref|NM_001180619.3|

Nucleotide

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