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1.

A compendium map of Cis-Regulatory Elements in the Pig Genome and epigenetic comparison with the human Genome

(Submitter supplied) Although major advances in genomics have initiated an exciting new era of research, the lack of information about cis-regulatory elements has limited the genetic improvement or manipulation of pig as meat source and biomedical model. Here, we systematically characterize the cis-regulatory elements and their functions in the pig genome in 12 diverse tissues from 4 pig breeds through RNA-Seq, ATAC-Seq, and ChIP-Seq analyses. more...
Organism:
Sus scrofa
Type:
Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL22918
200 Samples
Download data: BED, BEDGRAPH, BIGWIG, NARROWPEAK
Series
Accession:
GSE143288
ID:
200143288
2.

HiSeq X Ten (Sus scrofa)

Platform
Accession:
GPL22918
ID:
100022918
3.

MS_2W_2_Muscle_ATAC

Organism:
Sus scrofa
Source name:
Muscle
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256401
ID:
304256401
4.

MS_2W_2_Liver_ATAC

Organism:
Sus scrofa
Source name:
Liver
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256400
ID:
304256400
5.

MS_2W_2_Fat_ATAC

Organism:
Sus scrofa
Source name:
Fat
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256398
ID:
304256398
6.

MS_2W_1_Fat_ATAC

Organism:
Sus scrofa
Source name:
Fat
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256397
ID:
304256397
7.

LW_2W_2_Muscle_ATAC

Organism:
Sus scrofa
Source name:
Muscle
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256396
ID:
304256396
8.

LW_2W_1_Muscle_ATAC

Organism:
Sus scrofa
Source name:
Muscle
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256395
ID:
304256395
9.

LW_2W_1_Liver_ATAC

Organism:
Sus scrofa
Source name:
Liver
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256393
ID:
304256393
10.

LW_2W_2_Fat_ATAC

Organism:
Sus scrofa
Source name:
Fat
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256392
ID:
304256392
11.

LW_2W_1_Fat_ATAC

Organism:
Sus scrofa
Source name:
Fat
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256391
ID:
304256391
12.

ES_2W_1_Spleen_ATAC

Organism:
Sus scrofa
Source name:
Spleen
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256390
ID:
304256390
13.

ES_2W_2_Muscle_ATAC

Organism:
Sus scrofa
Source name:
Muscle
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256389
ID:
304256389
14.

ES_2W_1_Muscle_ATAC

Organism:
Sus scrofa
Source name:
Muscle
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256388
ID:
304256388
15.

ES_2W_2_Liver_ATAC

Organism:
Sus scrofa
Source name:
Liver
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256387
ID:
304256387
16.

ES_2W_1_Heart_ATAC

Organism:
Sus scrofa
Source name:
Heart
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256385
ID:
304256385
17.

ES_2W_2_Fat_ATAC

Organism:
Sus scrofa
Source name:
Fat
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256384
ID:
304256384
18.

ES_2W_1_Fat_ATAC

Organism:
Sus scrofa
Source name:
Fat
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256383
ID:
304256383
19.

Duroc_2W_1_Spleen_ATAC

Organism:
Sus scrofa
Source name:
Spleen
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256382
ID:
304256382
20.

Duroc_2W_2_Muscle_ATAC

Organism:
Sus scrofa
Source name:
Muscle
Platform:
GPL22918
Series:
GSE143288
Download data: BIGWIG, NARROWPEAK
Sample
Accession:
GSM4256381
ID:
304256381
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Supplemental Content

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