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Items: 12

1.

RNA-sequencing experiments to identify differentially expressed genes between Wild Type and RBM4 KO HAP1 cell line samples

(Submitter supplied) Here, we implemented a computational pipeline to determine the correlation of expression between individual RBPs and ERVs from single-cell or bulk RNA sequencing data. One of our top candidates for an RBP negatively regulating ERV expression was RNA-Binding Motif Protein 4 (RBM4). This set of bulk RNA-sequencing experiments was performed to identify differentially expressed genes and repetitive elements, particularly HERVs, between independent Wild Type and RBM4 KO clones in the KBM-7 derived, near-haploid human cell line, HAP1
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL18573
10 Samples
Download data: TSV
Series
Accession:
GSE147893
ID:
200147893

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12530 Series
341775 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

Single-end RBM4 KO Clone

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448412
ID:
304448412

SRA Run Selector

4.

Single-end Wild Type

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448411
ID:
304448411

SRA Run Selector

5.

RBM4 KO Clone 2 replicate 2

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448410
ID:
304448410

SRA Run Selector

6.

RBM4 KO Clone 2 replicate 1

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448409
ID:
304448409

SRA Run Selector

7.

RBM4 KO Clone 1 replicate 3

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448408
ID:
304448408

SRA Run Selector

8.

RBM4 KO Clone 1 replicate 2

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448407
ID:
304448407

SRA Run Selector

9.

RBM4 KO Clone 1 replicate 1

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448406
ID:
304448406

SRA Run Selector

10.

Wild Type replicate 3

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448405
ID:
304448405

SRA Run Selector

11.

Wild Type replicate 2

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448404
ID:
304448404

SRA Run Selector

12.

Wild Type replicate 1

Organism:
Homo sapiens
Source name:
KBM-7 derived near-haploid cell line
Platform:
GPL18573
Series:
GSE147893 GSE147897
Download data
Sample
Accession:
GSM4448403
ID:
304448403

SRA Run Selector

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