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Items: 20

1.

Sodium fluoride exposure leads to ATP depletion and altered RNA decay in Escherichia coli under anaerobic conditions

(Submitter supplied) We report genome-wide transcriptome profiles of E. coli obtained in the absence (control) and presence of 20 mM and 70 mM sodium fluoride (NaF) under anaerobic conditions, and assess the impact of fluoride-dependent ATP depletion on RNA turnover. We found that transcripts with increased abundance in response to NaF treatment correspond to genes that control cell envelope and osmotic stress adaptation, signal transduction systems, lipid biosynthesis, amine and polyamine degradation as well as acquisition of iron and iron homeostasis. more...
Organism:
Escherichia coli str. K-12 substr. MG1655; Escherichia coli
Type:
Expression profiling by array
Platform:
GPL10416
18 Samples
Download data: PAIR, TXT
Series
Accession:
GSE211579
ID:
200211579

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

NimbleGen E. coli K12 Mg1655 385K array

(Submitter supplied) This is a commercial 385K high density tiling array from NimbleGen for E. coli K12 MG1655 (Cat. No. 05542901001). The design contains 50-mer probe with 24 bp median probe spacing and the control probes are also included. native array description file: 2006-07-18_Ecoli_K12_ChIP.ndf native array description file: 2006-07-18_Ecoli_K12_ChIP.pos Protocol: see manufacturer's web site www.nimblegen.com
Organism:
Escherichia coli str. K-12 substr. MG1655
4 Series
32 Samples
Download data: NDF, POS
Platform
Accession:
GPL10416
ID:
100010416

3.

Diluted 70 mM NaF_rep3

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted 70 mM NaF_rep3
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481085
ID:
306481085

4.

Diluted 20 mM NaF_rep3

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted 20 mM NaF_rep3
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481084
ID:
306481084

5.

Diluted control_rep3

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted control_rep3
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481083
ID:
306481083

6.

70 mM NaF_rep3

Organism:
Escherichia coli
Source name:
total RNA from E coli of 70 mM NaF_rep3
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481082
ID:
306481082

7.

20 mM NaF_rep3

Organism:
Escherichia coli
Source name:
total RNA from E coli of 20 mM NaF_rep3
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481081
ID:
306481081

8.

control_rep3

Organism:
Escherichia coli
Source name:
total RNA from E coli of control_rep3
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481080
ID:
306481080

9.

Diluted 70 mM NaF_rep2

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted 70 mM NaF_rep2
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481079
ID:
306481079

10.

Diluted 20 mM NaF_rep2

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted 20 mM NaF_rep2
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481078
ID:
306481078

11.

Diluted control_rep2

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted control_rep2
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481077
ID:
306481077

12.

70 mM NaF_rep2

Organism:
Escherichia coli
Source name:
total RNA from E coli of 70 mM NaF_rep2
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481076
ID:
306481076

13.

20 mM NaF_rep2

Organism:
Escherichia coli
Source name:
total RNA from E coli of 20 mM NaF_rep2
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481075
ID:
306481075

14.

control_rep2

Organism:
Escherichia coli
Source name:
total RNA from E coli of control_rep2
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481074
ID:
306481074

15.

Diluted 70 mM NaF_rep1

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted 70 mM NaF_rep1
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481073
ID:
306481073

16.

Diluted 20 mM NaF_rep1

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted 20 mM NaF_rep1
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481072
ID:
306481072

17.

Diluted control_rep1

Organism:
Escherichia coli
Source name:
total RNA from E coli of Diluted control_rep1
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481071
ID:
306481071

18.

70 mM NaF_rep1

Organism:
Escherichia coli
Source name:
total RNA from E coli of 70 mM NaF_rep1
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481070
ID:
306481070

19.

20 mM NaF_rep1

Organism:
Escherichia coli
Source name:
total RNA from E coli of 20 mM NaF_rep1
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481069
ID:
306481069

20.

control_rep1

Organism:
Escherichia coli
Source name:
total RNA from E coli of control_rep1
Platform:
GPL10416
Series:
GSE211579
Download data: PAIR, TXT
Sample
Accession:
GSM6481068
ID:
306481068

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