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Items: 11

1.

Systematic mapping of TF-mediated cell fate changes by a pooled inductioncoupled with scRNA-seq and multi-omics approaches

(Submitter supplied) Transcriptional regulation controls various cellular functions via the interactionsbetween cell-type-specific transcription factors (TFs) and their chromosomaltargets. While multiple TFs capable of converting cell fates from one to anotherhave been reported, only a few systematic studies aiming to understand thefate conversion potential of numerous individual TFs have been reported. Here,we propose an iTF-seq method (pooled induction of individual TFs followed bysingle-cell RNA sequencing) to identify potent TFs capable of converting cellfates and elucidate their lineage specification potential at a single-cell level.Enabling metabolic biotinylation of TFs during the process, the method allowssubsequent multi-omics approaches to understand underlying actionmechanisms of TFs during cell fate changes. more...
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL24247
9 Samples
Download data: BW
Series
Accession:
GSE220724
ID:
200220724
2.

Illumina NovaSeq 6000 (Mus musculus)

Platform
Accession:
GPL24247
ID:
100024247
3.

Otx2, D1, ATAC

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813095
ID:
306813095
4.

Otx2, D0, ATAC

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813094
ID:
306813094
5.

Gcm1, D1, ATAC

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813093
ID:
306813093
6.

Gcm1, D0, ATAC

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813092
ID:
306813092
7.

Nanog, bioChIP

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813091
ID:
306813091
8.

Otx2, D1, bioChIP

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813090
ID:
306813090
9.

Otx2, D0, bioChIP

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813089
ID:
306813089
10.

Gcm1, D1, bioChIP

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813088
ID:
306813088
11.

Gcm1, D0, bioChIP

Organism:
Mus musculus
Source name:
pre-implantation embryo
Platform:
GPL24247
Series:
GSE220724
Download data: BW
Sample
Accession:
GSM6813087
ID:
306813087
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Supplemental Content

db=gds|term=GSE220724[Accession]|query=1|qty=2|blobid=MCID_667ead979041cd510ce00352|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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