GSE227898[Accession] - GEO DataSets - NCBI

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Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma

(Submitter supplied) Identifying tumor-cell-specific markers and elucidating their epigenetic regulation and spatial heterogeneity provides mechanistic insights into cancer etiology. Here, we have performed snRNA-seq and snATAC-seq in 34 and 28 human clear cell renal cell carcinoma (ccRCC) specimens, respectively, with matched bulk proteogenomics data. By identifying 20 tumor-specific markers through a multi-omics tiered approach, we reveal an association between higher ceruloplasmin (CP) expression and reduced survival. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL24676
62 Samples

Download data: TAR, TSV

Series

Accession:: GSE227898

ID:: 200227898

PubMed Full text in PMC Similar studies

Select item 1000246762.

Illumina NovaSeq 6000 (Homo sapiens)

Organism:: Homo sapiens

17049 Series
931958 Samples

Platform

Accession:: GPL24676

ID:: 100024676

Select item 3071104853.

CPT0078510004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110485

ID:: 307110485

Select item 3071104844.

CPT0012550012_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110484

ID:: 307110484

Select item 3071104835.

CPT0012280004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110483

ID:: 307110483

Select item 3071104826.

CPT0086820004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110482

ID:: 307110482

Select item 3071104817.

CPT0063630004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110481

ID:: 307110481

Select item 3071104808.

CPT0079410004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110480

ID:: 307110480

Select item 3071104799.

CPT0023690004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110479

ID:: 307110479

Select item 30711047810.

CPT0086350004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110478

ID:: 307110478

Select item 30711047711.

CPT0019130004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110477

ID:: 307110477

Select item 30711047612.

CPT0010160004_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110476

ID:: 307110476

Select item 30711047513.

CPT0010100001_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110475

ID:: 307110475

Select item 30711047414.

CPT0001180011_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110474

ID:: 307110474

Select item 30711047315.

CPT0000870003_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110473

ID:: 307110473

Select item 30711047216.

CPT0000880001_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110472

ID:: 307110472

Select item 30711047117.

CPT0000890002_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110471

ID:: 307110471

Select item 30711047018.

CPT0001260013_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110470

ID:: 307110470

Select item 30711046919.

CPT0001270002_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110469

ID:: 307110469

Select item 30711046820.

CPT0001500003_snATAC

Organism:: Homo sapiens

Source name:: Kidney

Platform:: GPL24676
Series:: GSE227898

Download data: TAR, TSV

Sample

Accession:: GSM7110468

ID:: 307110468

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GSE227898[Accession] (64)
GEO DataSets
beta-tubulin, partial [Aspergillus germanicus]
beta-tubulin, partial [Aspergillus germanicus]
gi|2722110157|gb|WZW82006.1|

Protein
Tachycineta euchrysea nuclear anonymous locus 16214 genomic sequence
Tachycineta euchrysea nuclear anonymous locus 16214 genomic sequence
gi|440505300|gb|JX299456.1|

Nucleotide
Tachycineta cyaneoviridis voucher LSUMNS B59082 nuclear anonymous locus 16214 ge...
Tachycineta cyaneoviridis voucher LSUMNS B59082 nuclear anonymous locus 16214 genomic sequence
gi|440505298|gb|JX299454.1|

Nucleotide
Tachycineta thalassina voucher CUMV 50936 nuclear anonymous locus 16214 genomic ...
Tachycineta thalassina voucher CUMV 50936 nuclear anonymous locus 16214 genomic sequence
gi|440505293|gb|JX299449.1|

Nucleotide

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