GSE228397[Accession] - GEO DataSets - NCBI

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Select item 2002283971.

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [ChIP-seq]

(Submitter supplied) Genome organization in diverse eukaryotes follows conserved principles including the formation of chromosome territories (CT), chromatin compartments, and TADs. Here, we describe the 3D architecture of holocentric chromosomes in the silkworm Bombyx mori. At the genome-wide scale, B. mori chromosomes are highly territorial lacking any visible trans contact pattern. At the chromosomal scale, B. mori chromosomes segregate into three chromatin compartments: an active A and an inactive B as described in other eukaryotes, and a third type, X, with a unique contact pattern. more...

Organism:: Bombyx mori

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL29210
20 Samples

Download data: BIGWIG

Series

Accession:: GSE228397

ID:: 200228397

PubMed Full text in PMC Similar studies

Select item 1000292102.

Illumina NovaSeq 6000 (Bombyx mori)

Organism:: Bombyx mori

16 Series
110 Samples

Platform

Accession:: GPL29210

ID:: 100029210

Select item 3071202723.

D1221C23_ChIP_p50_D2-24h_Bmori-v4_H2A.z_Input

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Sample

Accession:: GSM7120272

ID:: 307120272

SRA Run Selector

Select item 3071202714.

D1221C24_ChIP_p50_D2-24h_Bmori-v4_H2A.z_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120271

ID:: 307120271

SRA Run Selector

Select item 3071202705.

D1221C19_ChIP_p50_D2-24h_Bmori-v4_H4K20me1_rep2_Input

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Sample

Accession:: GSM7120270

ID:: 307120270

SRA Run Selector

Select item 3071202696.

D1221C20_ChIP_p50_D2-24h_Bmori-v4_H4K20me1_rep2_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120269

ID:: 307120269

SRA Run Selector

Select item 3071202687.

D831C85_ChIP_p50_D2-24h_Bmori-v4_H4K20me1_rep1_Input

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Sample

Accession:: GSM7120268

ID:: 307120268

SRA Run Selector

Select item 3071202678.

D831C86_ChIP_p50_D2-24h_Bmori-v4_H4K20me1_rep1_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120267

ID:: 307120267

SRA Run Selector

Select item 3071202669.

D577C39_ChIP_p50_D2-24h_Bmori-v4_H3K9me3_rep2_Input

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Sample

Accession:: GSM7120266

ID:: 307120266

SRA Run Selector

Select item 30712026510.

D577C40_ChIP_p50_D2-24h_Bmori-v4_H3K9me3_rep2_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120265

ID:: 307120265

SRA Run Selector

Select item 30712026411.

D831C77_ChIP_p50_D2-24h_Bmori-v4_H3K9me3_rep1_Input

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Sample

Accession:: GSM7120264

ID:: 307120264

SRA Run Selector

Select item 30712026312.

D831C78_ChIP_p50_D2-24h_Bmori-v4_H3K9me3_rep1_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120263

ID:: 307120263

SRA Run Selector

Select item 30712026213.

D506-D492C29_ChIP_p50_D2-24h_Bmori-v4_H3K27me3_rep2_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120262

ID:: 307120262

SRA Run Selector

Select item 30712026114.

D330C100_ChIP_p50_D2-24h_Bmori-v4_H3K27me3_rep1_Input

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Sample

Accession:: GSM7120261

ID:: 307120261

SRA Run Selector

Select item 30712026015.

D330C101_ChIP_p50_D2-24h_Bmori-v4_H3K27me3_rep1_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120260

ID:: 307120260

SRA Run Selector

Select item 30712025916.

D506-D492C30_ChIP_p50_D2-24h_Bmori-v4_H3K36me3_rep2_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120259

ID:: 307120259

SRA Run Selector

Select item 30712025817.

D330C102_ChIP_p50_D2-24h_Bmori-v4_H3K36me3_rep1_Input

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Sample

Accession:: GSM7120258

ID:: 307120258

SRA Run Selector

Select item 30712025718.

D330C103_ChIP_p50_D2-24h_Bmori-v4_H3K36me3_rep1_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120257

ID:: 307120257

SRA Run Selector

Select item 30712025619.

D1221C17_ChIP_p50_D2-24h_Bmori-v4_H3K4me3_rep2_Input

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Sample

Accession:: GSM7120256

ID:: 307120256

SRA Run Selector

Select item 30712025520.

D1221C18_ChIP_p50_D2-24h_Bmori-v4_H3K4me3_rep2_IP

Organism:: Bombyx mori

Source name:: full embryo

Platform:: GPL29210
Series:: GSE228397 GSE228401

Download data: BIGWIG

Sample

Accession:: GSM7120255

ID:: 307120255

SRA Run Selector

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