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Items: 15

1.

A bioinformatic pipeline for analysis of M.EcoGII methylation footprint PacBio long-read sequence data

(Submitter supplied) Recent studies have combined DNA methyltransferase footprinting of genomic DNA in nuclei with long-read sequencing, resulting in detailed chromatin maps for multi-kilobase stretches of genomic DNA from one cell. Nucleosome footprints and nucleosome-depleted regions can be identified, yielding unprecedented information concerning their degree of correlation within the same cell. The enzyme of choice is M.EcoGII, which methylates adenines in any sequence context, potentially resulting in very high resolution. more...
Organism:
Saccharomyces cerevisiae; Escherichia coli
Type:
Other
Platforms:
GPL29643 GPL32099
12 Samples
Download data: BAM, BED, BIGWIG
Series
Accession:
GSE243114
ID:
200243114

PubMed Full text in PMC Similar studies

2.

Sequel (Saccharomyces cerevisiae)

Organism:
Saccharomyces cerevisiae
2 Series
11 Samples
Download data
Platform
Accession:
GPL32099
ID:
100032099

3.

Sequel II (Escherichia coli)

Organism:
Escherichia coli
2 Series
8 Samples
Download data
Platform
Accession:
GPL29643
ID:
100029643

4.

pUC19, mock-treated, rep2

Organism:
Escherichia coli
Source name:
NA
Platform:
GPL29643
Series:
GSE243114
Download data: BAM, BIGWIG
Sample
Accession:
GSM7779514
ID:
307779514

SRA Run Selector

5.

pUC19, dam-treated, rep2

Organism:
Escherichia coli
Source name:
NA
Platform:
GPL29643
Series:
GSE243114
Download data: BAM, BIGWIG
Sample
Accession:
GSM7779513
ID:
307779513

SRA Run Selector

6.

pUC19, M.EcoGII-treated, rep2

Organism:
Escherichia coli
Source name:
NA
Platform:
GPL29643
Series:
GSE243114
Download data: BAM, BIGWIG
Sample
Accession:
GSM7779512
ID:
307779512

SRA Run Selector

7.

pUC19, mock-treated, rep1

Organism:
Escherichia coli
Source name:
NA
Platform:
GPL29643
Series:
GSE243114
Download data: BAM, BIGWIG
Sample
Accession:
GSM7779511
ID:
307779511

SRA Run Selector

8.

pUC19, dam-treated, rep1

Organism:
Escherichia coli
Source name:
NA
Platform:
GPL29643
Series:
GSE243114
Download data: BAM, BIGWIG
Sample
Accession:
GSM7779510
ID:
307779510

SRA Run Selector

9.

pUC19, M.EcoGII-treated, rep1

Organism:
Escherichia coli
Source name:
NA
Platform:
GPL29643
Series:
GSE243114
Download data: BAM, BIGWIG
Sample
Accession:
GSM7779509
ID:
307779509

SRA Run Selector

10.

Genomic DNA, M.EcoGII-treated, rep2

Organism:
Saccharomyces cerevisiae
Source name:
W303 background
Platform:
GPL32099
Series:
GSE243114
Download data: BAM
Sample
Accession:
GSM7779508
ID:
307779508

SRA Run Selector

11.

Nuclei, mock-treated, rep2

Organism:
Saccharomyces cerevisiae
Source name:
W303 background
Platform:
GPL32099
Series:
GSE243114
Download data: BAM
Sample
Accession:
GSM7779507
ID:
307779507

SRA Run Selector

12.

Nuclei, M.EcoGII-treated, rep2

Organism:
Saccharomyces cerevisiae
Source name:
W303 background
Platform:
GPL32099
Series:
GSE243114
Download data: BAM, BED
Sample
Accession:
GSM7779506
ID:
307779506

SRA Run Selector

13.

Genomic DNA, M.EcoGII-treated, rep1

Organism:
Saccharomyces cerevisiae
Source name:
W303 background
Platform:
GPL32099
Series:
GSE243114
Download data: BAM
Sample
Accession:
GSM7779505
ID:
307779505

SRA Run Selector

14.

Nuclei, mock-treated, rep1

Organism:
Saccharomyces cerevisiae
Source name:
W303 background
Platform:
GPL32099
Series:
GSE243114
Download data: BAM
Sample
Accession:
GSM7779504
ID:
307779504

SRA Run Selector

15.

Nuclei, M.EcoGII-treated, rep1

Organism:
Saccharomyces cerevisiae
Source name:
W303 background
Platform:
GPL32099
Series:
GSE243114
Download data: BAM, BED
Sample
Accession:
GSM7779503
ID:
307779503

SRA Run Selector

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