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Items: 13

1.

Transcriptome-wide mapping of RNA secondary structure ensembles in a living cell

(Submitter supplied) RNA molecules can populate an ensemble of alternative structural conformations, but the true extent of the RNA secondary structure folding space of a living cell has never been explored. We here generated the first transcriptome-wide maps of RNA secondary structure ensembles in Escherichia coli, both at physiological temperature and upon cold-shock. Our analysis revealed hundreds of novel putative conserved RNA switches.
Organism:
Escherichia coli
Type:
Other
Platforms:
GPL33918 GPL33919
10 Samples
Download data: WIG
Series
Accession:
GSE247244
ID:
200247244
2.

NextSeq 1000 (Escherichia coli)

Organism:
Escherichia coli
2 Series
8 Samples
Download data
Platform
Accession:
GPL33919
ID:
100033919
3.

DNBSEQ-G400 (Escherichia coli)

Organism:
Escherichia coli
1 Series
6 Samples
Download data
Platform
Accession:
GPL33918
ID:
100033918
4.

DMS-MaPseq of E. coli TOP10, in vitro refolded, 37°C (mRNA)

Organism:
Escherichia coli
Source name:
TOP10
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM8335534
ID:
308335534
5.

DMS-MaPseq of E. coli DH5a, in vitro refolded, 37°C (mRNA)

Organism:
Escherichia coli
Source name:
DH5a
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM8335533
ID:
308335533
6.

DMS-MaPseq of E. coli TOP10, exponential phase, 10°C cold-shock (mRNA)

Organism:
Escherichia coli
Source name:
TOP10
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885841
ID:
307885841
7.

DMS-MaPseq of E. coli DH5a, exponential phase, 10°C cold-shock (mRNA)

Organism:
Escherichia coli
Source name:
DH5a
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885840
ID:
307885840
8.

DMS-MaPseq of E. coli TOP10, exponential phase, 37°C (mRNA)

Organism:
Escherichia coli
Source name:
TOP10
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885839
ID:
307885839
9.

DMS-MaPseq of E. coli DH5a, exponential phase, 37°C (mRNA)

Organism:
Escherichia coli
Source name:
DH5a
Platform:
GPL33918
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885838
ID:
307885838
10.

DMS-MaPseq of E. coli TOP10, exponential phase, ex vivo, 37°C (total RNA)

Organism:
Escherichia coli
Source name:
TOP10
Platform:
GPL33919
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885845
ID:
307885845
11.

DMS-MaPseq of E. coli DH5a, exponential phase, ex vivo, 37°C (total RNA)

Organism:
Escherichia coli
Source name:
DH5a
Platform:
GPL33919
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885844
ID:
307885844
12.

DMS-MaPseq of E. coli TOP10, exponential phase, in vivo, 37°C (total RNA)

Organism:
Escherichia coli
Source name:
TOP10
Platform:
GPL33919
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885843
ID:
307885843
13.

DMS-MaPseq of E. coli DH5a, exponential phase, in vivo, 37°C (total RNA)

Organism:
Escherichia coli
Source name:
DH5a
Platform:
GPL33919
Series:
GSE247244
Download data: WIG
Sample
Accession:
GSM7885842
ID:
307885842
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Supplemental Content

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