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Items: 12

1.

High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing [Iso-Seq]

(Submitter supplied) Kaposi’s sarcoma-associated herpesvirus is etiologic agent of Kaposi’s Sarcoma and two B-cell malignancies. Recent advancements in sequencing technologies have led to high resolution transcriptomes for several human herpesviruses that densely encode genes on both strands. However, for KSHV progress remained limited due to overall low percentage of KSHV transcripts even during lytic replication. To address this challenge, we have developed a target enrichment method to increase the KSHV-specific reads for both short- and long-read sequencing platforms. more...
Organism:
Homo sapiens
Type:
Other
Platforms:
GPL26180 GPL28352
9 Samples
Download data: BEDGRAPH
Series
Accession:
GSE250432
ID:
200250432

PubMed Full text in PMC Similar studies

2.

Sequel II (Homo sapiens)

Organism:
Homo sapiens
141 Series
593 Samples
Download data
Platform
Accession:
GPL28352
ID:
100028352

3.

Sequel (Homo sapiens)

Organism:
Homo sapiens
37 Series
157 Samples
Download data
Platform
Accession:
GPL26180
ID:
100026180

4.

BCBL-1_48h_induced_3KbPlus

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL28352
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979094
ID:
307979094

SRA Run Selector

5.

KSHV_Enriched_BCBL-1_48h_induced_3KbPlus_BR2

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL26180
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979093
ID:
307979093

SRA Run Selector

6.

KSHV_Enriched_BCBL-1_48h_induced_3KbPlus_BR1

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL26180
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979092
ID:
307979092

SRA Run Selector

7.

KSHV_Enriched_BCBL-1_48h_induced_1.5-3Kb_BR2

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL26180
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979091
ID:
307979091

SRA Run Selector

8.

KSHV_Enriched_BCBL-1_48h_induced_1.5-3Kb_BR1

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL26180
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979090
ID:
307979090

SRA Run Selector

9.

KSHV_Enriched_BCBL-1_48h_induced_BR2

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL26180
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979089
ID:
307979089

SRA Run Selector

10.

KSHV_Enriched_BCBL-1_48h_induced_BR1

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL26180
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979088
ID:
307979088

SRA Run Selector

11.

BCBL-1_48h_induced_BR2

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL26180
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979087
ID:
307979087

SRA Run Selector

12.

BCBL-1_48h_induced_BR1

Organism:
Homo sapiens
Source name:
BCBL-1
Platform:
GPL26180
Series:
GSE250432 GSE250435
Download data
Sample
Accession:
GSM7979086
ID:
307979086

SRA Run Selector

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db=gds|term=GSE250432[Accession]|query=2|qty=2|blobid=MCID_672a116f9a6e6010c11c4b77|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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