GSE254895[Accession] - GEO DataSets - NCBI

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A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS

(Submitter supplied) A key to understanding the roles of RNA in regulating gene expression is knowing their structures in vivo. One way to obtain this information is through probing structures of RNA with chemicals. To probe RNA structure directly in cells, membrane-permeable reagents that modify the Watson-Crick (WC) face of unpaired nucleotides can be used. While dimethyl sulfate (DMS) has led to substantial insight into RNA structure, it has limited nucleotide specificity in vivo, with WC face reactivity only at Adenine (A) and Cytosine (C) at neutral pH. more...

Organism:: Escherichia coli

Type:: Other

Platform:: GPL32081
33 Samples

Download data: TXT

Series

Accession:: GSE254895

ID:: 200254895

PubMed Similar studies

Select item 1000320812.

NextSeq 2000 (Escherichia coli)

Organism:: Escherichia coli

13 Series
539 Samples

Platform

Accession:: GPL32081

ID:: 100032081

Select item 3080599223.

ETC_tgirt60_repC

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059922

ID:: 308059922

SRA Run Selector

Select item 3080599214.

ETC_tgirt60_repB

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059921

ID:: 308059921

SRA Run Selector

Select item 3080599205.

ETC_tgirt60_repA

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059920

ID:: 308059920

SRA Run Selector

Select item 3080599196.

UT_tgirt60_repC

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059919

ID:: 308059919

SRA Run Selector

Select item 3080599187.

UT_tgirt60_repB

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059918

ID:: 308059918

SRA Run Selector

Select item 3080599178.

UT_tgirt60_repA

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059917

ID:: 308059917

SRA Run Selector

Select item 3080599169.

DMS_tgirt55_repC

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059916

ID:: 308059916

SRA Run Selector

Select item 30805991510.

DMS_tgirt55_repB

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059915

ID:: 308059915

SRA Run Selector

Select item 30805991411.

DMS_tgirt55_repA

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059914

ID:: 308059914

SRA Run Selector

Select item 30805991312.

ETC_tgirt55_repC

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059913

ID:: 308059913

SRA Run Selector

Select item 30805991213.

ETC_tgirt55_repB

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059912

ID:: 308059912

SRA Run Selector

Select item 30805991114.

ETC_tgirt55_repA

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059911

ID:: 308059911

SRA Run Selector

Select item 30805991015.

UT_tgirt55_repC

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059910

ID:: 308059910

SRA Run Selector

Select item 30805990916.

UT_tgirt55_repB

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059909

ID:: 308059909

SRA Run Selector

Select item 30805990817.

UT_tgirt55_repA

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059908

ID:: 308059908

SRA Run Selector

Select item 30805990718.

ETC_tgirt50_repC

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059907

ID:: 308059907

SRA Run Selector

Select item 30805990619.

ETC_tgirt50_repB

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059906

ID:: 308059906

SRA Run Selector

Select item 30805990520.

ETC_tgirt50_repA

Organism:: Escherichia coli

Source name:: bacterial cells

Platform:: GPL32081
Series:: GSE254895

Download data: TXT

Sample

Accession:: GSM8059905

ID:: 308059905

SRA Run Selector

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GSE254895[Accession] (35)
GEO DataSets
probable C-mannosyltransferase DPY19L2 isoform X15 [Homo sapiens]
probable C-mannosyltransferase DPY19L2 isoform X15 [Homo sapiens]
gi|2462531461|ref|XP_054227793.1|

Protein
Pelodiscus sinensis unplaced genomic scaffold C71465385, whole genome shotgun se...
Pelodiscus sinensis unplaced genomic scaffold C71465385, whole genome shotgun sequence
gi|351663611|gnl|WGS:AGCU01|C714653 |JH215035.1|

Nucleotide
Pelodiscus sinensis unplaced genomic scaffold C71796168, whole genome shotgun se...
Pelodiscus sinensis unplaced genomic scaffold C71796168, whole genome shotgun sequence
gi|351661403|gnl|WGS:AGCU01|C717961 |JH217243.1|

Nucleotide
spermatogenesis-associated serine-rich protein 2 [Homo sapiens]
spermatogenesis-associated serine-rich protein 2 [Homo sapiens]
gi|148746220|ref|NP_075559.2|

Protein

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