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Items: 11

1.

Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development

(Submitter supplied) RNA-seq analysis of developmental stages from the filamenous ascomycete Sordaria macrospora. Using laser capture microdissection, we separated protoperithecia (young fruiting bodies) from the surrounding hyphae. RNA isolation and amplification from 150 protoperithecia yields enough material for RNA-seq analysis. The resulting data were compared to RNA-seq data from whole mycelial exctracts (total vegetative and total sexual mycelium) to characterize the genome-wide spatial distribution of gene expression during sexual development. more...
Organism:
Sordaria macrospora
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL14881 GPL14880
8 Samples
Download data: BAM, TXT
Series
Accession:
GSE33668
ID:
200033668
2.

Illumina HiSeq 2000 (Sordaria macrospora)

Organism:
Sordaria macrospora
3 Series
15 Samples
Download data
Platform
Accession:
GPL14881
ID:
100014881
3.

Illumina Genome Analyzer II (Sordaria macrospora)

Organism:
Sordaria macrospora
1 Series
2 Samples
Download data
Platform
Accession:
GPL14880
ID:
100014880
4.

Sordaria_macrospora_SM9

Organism:
Sordaria macrospora
Source name:
pro1 protoperithecia
Platform:
GPL14881
Series:
GSE33668
Download data: BAM
Sample
Accession:
GSM832536
ID:
300832536
5.

Sordaria_macrospora_SM8

Organism:
Sordaria macrospora
Source name:
pro1 protoperithecia
Platform:
GPL14881
Series:
GSE33668
Download data: BAM
Sample
Accession:
GSM832535
ID:
300832535
6.

Sordaria_macrospora_SM7

Organism:
Sordaria macrospora
Source name:
wild type sexual mycelium
Platform:
GPL14881
Series:
GSE33668
Download data: BAM
Sample
Accession:
GSM832534
ID:
300832534
7.

Sordaria_macrospora_SM6

Organism:
Sordaria macrospora
Source name:
wild type vegetative mycelium
Platform:
GPL14881
Series:
GSE33668
Download data: BAM
Sample
Accession:
GSM832533
ID:
300832533
8.

Sordaria_macrospora_SM5

Organism:
Sordaria macrospora
Source name:
wild type protoperithecia
Platform:
GPL14881
Series:
GSE33668
Download data: BAM
Sample
Accession:
GSM832532
ID:
300832532
9.

Sordaria_macrospora_SM4

Organism:
Sordaria macrospora
Source name:
wild type protoperithecia
Platform:
GPL14881
Series:
GSE33668
Download data: BAM
Sample
Accession:
GSM832531
ID:
300832531
10.

Sordaria_macrospora_SM2

Organism:
Sordaria macrospora
Source name:
wild type sexual mycelium
Platform:
GPL14880
Series:
GSE33668
Download data: BAM
Sample
Accession:
GSM832530
ID:
300832530
11.

Sordaria_macrospora_SM1

Organism:
Sordaria macrospora
Source name:
wild type vegetative mycelium
Platform:
GPL14880
Series:
GSE33668
Download data: BAM
Sample
Accession:
GSM832529
ID:
300832529
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