GSE33735[Accession] - GEO DataSets

Select item 2000337351.

Escherichia coli Gene Expression Profiling in Response to the Interaction with Lettuce Rhizosphere

(Submitter supplied) Leafy green vegetables, such as lettuce, have been increasingly implicated in outbreaks of foodborne illnesses due to contamination by Escherichia coli O157:H7. While E. coli can survive in soils, colonize plants, and survive on produce, very little is known about the interaction of E. coli with the roots of growing lettuce plants. In these studies a combination of microarray analyses and microbial genetics were used to gain a comprehensive understanding of bacterial genes involved in the colonization and growth of E. more...

Organism:: Escherichia coli str. K-12 substr. MG1655; Escherichia coli

Type:: Expression profiling by array

Platform:: GPL10291
6 Samples

Download data: GPR, TXT

Series

Accession:: GSE33735

ID:: 200033735

Analyze with GEO2R

Select item 1000102912.

Ocimum Biosolutions E.coli O157 OciChip

(Submitter supplied) epoxide Protocol: E.coli O157 OcichipTM consists of 6336 spots printed on Corning® epoxy coated glass slides using Omnigrid (Gene Machines). Chip has been printed using 4x8 SMP4 pins on 75.5x 25.5x1.3 mm microarray glass slides with a spot area of 18 x36 cm. The origin offset values were 0 for X direction and 10000 for Y direction. The dot to dot distance is 240 mm; distance between subarrays is 150 mm and no of dots per array is 11x18=198. more...

Organism:: Escherichia coli

2 Series
2 Related Platforms
12 Samples

Download data

Platform

Accession:: GPL10291

ID:: 100010291

Select item 3008338653.

E. coli K12 interacted with lettuce rhizosphere rep6

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli MG1655 cells interacted with the lettuce rhizosphere for 3 days (channel 1) Escherichia coli MG1655 cells grown in the hydroponic system without interacting with the lettuce rhizosphere for 3 days (channel 2)

Platform:: GPL10291
Series:: GSE33735

Download data: GPR

Sample

Accession:: GSM833865

ID:: 300833865

Select item 3008338644.

E. coli K12 interacted with lettuce rhizosphere rep5

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli MG1655 cells interacted with the lettuce rhizosphere for 3 days (channel 1) Escherichia coli MG1655 cells grown in the hydroponic system without interacting with the lettuce rhizosphere for 3 days (channel 2)

Platform:: GPL10291
Series:: GSE33735

Download data: GPR

Sample

Accession:: GSM833864

ID:: 300833864

Select item 3008338635.

E. coli K12 interacted with lettuce rhizosphere rep4

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli MG1655 cells interacted with the lettuce rhizosphere for 3 days (channel 1) Escherichia coli MG1655 cells grown in the hydroponic system without interacting with the lettuce rhizosphere for 3 days (channel 2)

Platform:: GPL10291
Series:: GSE33735

Download data: GPR

Sample

Accession:: GSM833863

ID:: 300833863

Select item 3008338626.

E. coli K12 interacted with lettuce rhizosphere rep3

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli MG1655 cells interacted with the lettuce rhizosphere for 3 days (channel 1) Escherichia coli MG1655 cells grown in the hydroponic system without interacting with the lettuce rhizosphere for 3 days (channel 2)

Platform:: GPL10291
Series:: GSE33735

Download data: GPR

Sample

Accession:: GSM833862

ID:: 300833862

Select item 3008338617.

E. coli K12 interacted with lettuce rhizosphere rep2

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli MG1655 cells interacted with the lettuce rhizosphere for 3 days (channel 1) Escherichia coli MG1655 cells grown in the hydroponic system without interacting with the lettuce rhizosphere for 3 days (channel 2)

Platform:: GPL10291
Series:: GSE33735

Download data: GPR

Sample

Accession:: GSM833861

ID:: 300833861

Select item 3008338608.

E. coli K12 interacted with lettuce rhizosphere rep1

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli MG1655 cells interacted with the lettuce rhizosphere for 3 days (channel 1) Escherichia coli MG1655 cells grown in the hydroponic system without interacting with the lettuce rhizosphere for 3 days (channel 2)

Platform:: GPL10291
Series:: GSE33735

Download data: GPR

Sample

Accession:: GSM833860

ID:: 300833860

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