GSE40622[Accession] - GEO DataSets - NCBI

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Select item 2000406221.

Expanded Genomic Profiling of Circulating Tumor Cells in Metastatic Breast Cancer Patients to Assess Biomarker Status and Biology Over Time (CALGB 40502 and CALGB 40503, Alliance).

(Submitter supplied) We developed a novel approach to isolate tumor cells with high purity from blood which was subjected to immunomagnetic enrichment using EpCAM beads followed by fluorescence activated cell sorting (IE/FACS) to isolate EpCAM-positive cells away from leukocytes (CD45+). Duplicate samples of 20 cells were isolated from the same enriched blood from MBC patients and then subjected to DNA and RNA profiling in parallel. more...

Organism:: Homo sapiens

Type:: Expression profiling by RT-PCR; Genome variation profiling by genome tiling array

Platforms:: GPL6359 GPL16020
275 Samples

Download data: TXT

Series

Accession:: GSE40622

ID:: 200040622

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000160202.

Applied Biosystems TaqMan TLDA 64-Breast cancer associated-gene panel

(Submitter supplied) We selected 64 genes from previously published data focused on QPCR analyses of CTCs. Included in the list are clinically relevant genes, stem cell and epithelial-mesenchymal transition (EMT) markers, and highly expressed genes in breast and prostate cancers. We also included EPCAM and PTPRC (encodes CD45) to measure the expression of these markers specific for epithelial cells and leukocytes, respectively. more...

Organism:: Homo sapiens

3 Series
272 Samples

Platform

Accession:: GPL16020

ID:: 100016020

Select item 1000063593.

UCSF Cancer Center HumArray3.2

(Submitter supplied) Human BAC array. Two spot-to-clone data files linked below as supplementary files. Protocol: For a detailed description on how the arrays were made please refer to: Snijders et al. Nat Genet. 2001 Nov;29(3):263-4.

Organism:: Homo sapiens

8 Series
486 Samples

Download data: TXT

Platform

Accession:: GPL6359

ID:: 100006359

Select item 3009982704.

Organism:: Homo sapiens

Source name:: Blood Leukocytes

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998270

ID:: 300998270

Select item 3009982695.

CTC.83.20CTC.1.T2

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998269

ID:: 300998269

Select item 3009982686.

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998268

ID:: 300998268

Select item 3009982677.

CTC.81.50CD45.T2

Organism:: Homo sapiens

Source name:: Blood Leukocytes

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998267

ID:: 300998267

Select item 3009982668.

CTC.81.20CTC.1.T2

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998266

ID:: 300998266

Select item 3009982659.

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998265

ID:: 300998265

Select item 30099826410.

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998264

ID:: 300998264

Select item 30099826311.

CTC.52582.20CTC

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998263

ID:: 300998263

Select item 30099826212.

CTC.4043.50CD45

Organism:: Homo sapiens

Source name:: Blood Leukocytes

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998262

ID:: 300998262

Select item 30099826113.

CTC.4043.20CTC.1.T2

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998261

ID:: 300998261

Select item 30099826014.

CTC.4043.20CTC.1

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998260

ID:: 300998260

Select item 30099825915.

CTC.4042.50CD45

Organism:: Homo sapiens

Source name:: Blood Leukocytes

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998259

ID:: 300998259

Select item 30099825816.

CTC.4042.20CTC.1.T3

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998258

ID:: 300998258

Select item 30099825717.

CTC.4042.20CTC.1.T2.D1

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998257

ID:: 300998257

Select item 30099825618.

CTC.4042.20CTC.1

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998256

ID:: 300998256

Select item 30099825519.

CTC.4037.50CD45.1

Organism:: Homo sapiens

Source name:: Blood Leukocytes

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998255

ID:: 300998255

Select item 30099825420.

CTC.4037.20CTC.1

Organism:: Homo sapiens

Source name:: Circulating Tumor Cells

Platform:: GPL16020
Series:: GSE40622

Sample

Accession:: GSM998254

ID:: 300998254

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GSE40622[Accession] (278)
GEO DataSets
TFEB transcription factor EB [Homo sapiens]
TFEB transcription factor EB [Homo sapiens]
Gene ID:7942

Gene
Gene Links for Nucleotide (Select 21619088) (1)
Gene
txid688914[Subtree] (4)
Taxonomy
beta-tubulin, partial [Phytophthora cryptogea]
beta-tubulin, partial [Phytophthora cryptogea]
gi|922901710|gb|ALB00376.1|

Protein

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