GSE47691[Accession] - GEO DataSets - NCBI

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Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin

(Submitter supplied) Steroid hormones act as important developmental switches and their nuclear receptors regulate many genes. However, few hormone-dependent enhancers have been characterized and important aspects of their sequence architecture, cell type-specific activating and repressing functions, or the regulatory roles of their chromatin structure have remained unclear. We used STARR-seq, a recently developed enhancer-screening assay, and ecdysone signaling in two different Drosophila cell types to derive the first genome-wide hormone-dependent enhancer activity maps. more...

Organism:: Drosophila melanogaster

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other

Platform:: GPL13304
20 Samples

Download data: TXT

Series

Accession:: GSE47691

ID:: 200047691

PubMed Similar studies SRA Run Selector

Select item 1000133042.

Illumina HiSeq 2000 (Drosophila melanogaster)

Organism:: Drosophila melanogaster

906 Series
18306 Samples

Platform

Accession:: GPL13304

ID:: 100013304

Select item 3013570573.

OSC_STARRseq_with_ecd_rep2

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357057

ID:: 301357057

SRA Run Selector

Select item 3013570564.

OSC_STARRseq_with_ecd_rep1

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357056

ID:: 301357056

SRA Run Selector

Select item 3013570555.

OSC_STARRseq_no_ecd_rep2

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357055

ID:: 301357055

SRA Run Selector

Select item 3013570546.

OSC_STARRseq_no_ecd_rep1

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357054

ID:: 301357054

SRA Run Selector

Select item 3013570537.

S2_RNAseq_with_ecd_rep2

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357053

ID:: 301357053

SRA Run Selector

Select item 3013570528.

S2_RNAseq_with_ecd_rep1

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357052

ID:: 301357052

SRA Run Selector

Select item 3013570519.

S2_RNAseq_no_ecd_rep2

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357051

ID:: 301357051

SRA Run Selector

Select item 30135705010.

S2_RNAseq_no_ecd_rep1

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357050

ID:: 301357050

SRA Run Selector

Select item 30135704911.

S2_STARRseq_input

Organism:: Drosophila melanogaster

Source name:: whole genome library (in STARR-seq vector)

Platform:: GPL13304
Series:: GSE47691

Sample

Accession:: GSM1357049

ID:: 301357049

SRA Run Selector

Select item 30135704812.

S2_STARRseq_with_ecd_rep2

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357048

ID:: 301357048

SRA Run Selector

Select item 30135704713.

S2_STARRseq_with_ecd_rep1

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357047

ID:: 301357047

SRA Run Selector

Select item 30135704614.

S2_STARRseq_no_ecd_rep2

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357046

ID:: 301357046

SRA Run Selector

Select item 30135704515.

S2_STARRseq_no_ecd_rep1

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1357045

ID:: 301357045

SRA Run Selector

Select item 30119904616.

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Sample

Accession:: GSM1199046

ID:: 301199046

SRA Run Selector

Select item 30119904517.

S2_ChIPseq_with_ecd

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1199045

ID:: 301199045

SRA Run Selector

Select item 30119904418.

S2_ChIPseq_no_ecd

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1199044

ID:: 301199044

SRA Run Selector

Select item 30115484019.

S2_DHSseq_with_ecd_24hrs_rep2

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1154840

ID:: 301154840

SRA Run Selector

Select item 30115483920.

S2_DHSseq_with_ecd_24hrs_rep1

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL13304
Series:: GSE47691

Download data: TXT

Sample

Accession:: GSM1154839

ID:: 301154839

SRA Run Selector

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GSE47691[Accession] (22)
GEO DataSets
Homo sapiens ras related dexamethasone induced 1 (RASD1), transcript variant 1, ...
Homo sapiens ras related dexamethasone induced 1 (RASD1), transcript variant 1, mRNA
gi|317008583|ref|NM_016084.4|

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