GSE58444[Accession] - GEO DataSets - NCBI

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Select item 2000584441.

The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites

(Submitter supplied) Long noncoding RNAs (lncRNAs) are important regulators of chromatin; however, the mechanistic roles for many lncRNAs are poorly understood in part because their direct interactions with genomic loci and proteins are difficult to assess. We used CHART-seq to map the genomic binding sites for two highly expressed human lncRNAs, NEAT1 and MALAT1, which localize within the nucleus to paraspeckles and nuclear speckles, respectively. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing; Other

Platform:: GPL11154
66 Samples

Download data: BW

Series

Accession:: GSE58444

ID:: 200058444

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10538 Series
183512 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3014112723.

MCF7 Input CHART-seq Flavopiridol treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, CHART input

Platform:: GPL11154
Series:: GSE58444

Sample

Accession:: GSM1411272

ID:: 301411272

SRA Run Selector

Select item 3014112714.

MCF7 MALAT1 Sense CHART-seq Flavopiridol treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411271

ID:: 301411271

SRA Run Selector

Select item 3014112705.

MCF7 MALAT1 CO2 CHART-seq Flavopiridol treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411270

ID:: 301411270

SRA Run Selector

Select item 3014112696.

MCF7 MALAT1 CO1 CHART-seq Flavopiridol treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411269

ID:: 301411269

SRA Run Selector

Select item 3014112687.

MCF7 NEAT1 Sense CHART-seq Flavopiridol treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, NEAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411268

ID:: 301411268

SRA Run Selector

Select item 3014112678.

MCF7 NEAT1 CO2 CHART-seq Flavopiridol treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, NEAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411267

ID:: 301411267

SRA Run Selector

Select item 3014112669.

MCF7 NEAT1 CO1 CHART-seq Flavopiridol treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, NEAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411266

ID:: 301411266

SRA Run Selector

Select item 30141126510.

MCF7 Input CHART-seq Flavopiridol treatment, rep1

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, CHART input

Platform:: GPL11154
Series:: GSE58444

Sample

Accession:: GSM1411265

ID:: 301411265

SRA Run Selector

Select item 30141126411.

MCF7 MALAT1 Sense CHART-seq Flavopiridol treatment, rep1

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411264

ID:: 301411264

SRA Run Selector

Select item 30141126312.

MCF7 MALAT1 CO2 CHART-seq Flavopiridol treatment, rep1

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411263

ID:: 301411263

SRA Run Selector

Select item 30141126213.

MCF7 MALAT1 CO1 CHART-seq Flavopiridol treatment, rep1

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411262

ID:: 301411262

SRA Run Selector

Select item 30141126114.

MCF7 NEAT1 Sense CHART-seq Flavopiridol treatment, rep1

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, NEAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411261

ID:: 301411261

SRA Run Selector

Select item 30141126015.

MCF7 NEAT1 CO2 CHART-seq Flavopiridol treatment, rep1

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, NEAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411260

ID:: 301411260

SRA Run Selector

Select item 30141125916.

MCF7 NEAT1 CO1 CHART-seq Flavopiridol treatment, rep1

Organism:: Homo sapiens

Source name:: MCF-7, Flavopiridol, NEAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411259

ID:: 301411259

SRA Run Selector

Select item 30141125817.

MCF7 Input CHART-seq DMSO treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, DMSO vehicle, CHART input

Platform:: GPL11154
Series:: GSE58444

Sample

Accession:: GSM1411258

ID:: 301411258

SRA Run Selector

Select item 30141125718.

MCF7 MALAT1 Sense CHART-seq DMSO treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, DMSO vehicle, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411257

ID:: 301411257

SRA Run Selector

Select item 30141125619.

MCF7 MALAT1 CO2 CHART-seq DMSO treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, DMSO vehicle, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411256

ID:: 301411256

SRA Run Selector

Select item 30141125520.

MCF7 MALAT1 CO1 CHART-seq DMSO treatment, rep2

Organism:: Homo sapiens

Source name:: MCF-7, DMSO vehicle, MALAT1 CHART

Platform:: GPL11154
Series:: GSE58444

Download data: BW

Sample

Accession:: GSM1411255

ID:: 301411255

SRA Run Selector

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