GSE78984[Accession] - GEO DataSets - NCBI

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Select item 2000789841.

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

(Submitter supplied) Chromatin accessibility plays a fundamental role in gene regulation. One mechanism to regulate accessibility is nucleosome placement, which is often measured by quantifying protection of DNA from enzymatic digestion. We introduce a metric that uses micrococcal nuclease (MNase) digestion in a novel manner to measure chromatin accessibility by combining information from several digests of increasing depths. more...

Organism:: Homo sapiens; Mus musculus; Drosophila melanogaster

Type:: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:: GPL16791 GPL17275 GPL17021
74 Samples

Download data: BEDGRAPH

Series

Accession:: GSE78984

ID:: 200078984

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000172752.

Illumina HiSeq 2500 (Drosophila melanogaster)

Organism:: Drosophila melanogaster

941 Series
20427 Samples

Platform

Accession:: GPL17275

ID:: 100017275

Select item 1000170213.

Illumina HiSeq 2500 (Mus musculus)

Organism:: Mus musculus

11104 Series
299264 Samples

Platform

Accession:: GPL17021

ID:: 100017021

Select item 1000167914.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

12192 Series
349329 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 3021252485.

NPC2 rep2 RNA expression

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Sample

Accession:: GSM2125248

ID:: 302125248

SRA Run Selector

Select item 3021252476.

NPC2 rep1 RNA expression

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Sample

Accession:: GSM2125247

ID:: 302125247

SRA Run Selector

Select item 3021252467.

ESC2 rep2 RNA expression

Organism:: Mus musculus

Source name:: J1 ESC

Platform:: GPL17021
Series:: GSE78984

Sample

Accession:: GSM2125246

ID:: 302125246

SRA Run Selector

Select item 3021252458.

ESC2 rep1 RNA expression

Organism:: Mus musculus

Source name:: J1 ESC

Platform:: GPL17021
Series:: GSE78984

Sample

Accession:: GSM2125245

ID:: 302125245

SRA Run Selector

Select item 3020831369.

NPC2 whole chromatin rep2 64U MNase

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083136

ID:: 302083136

SRA Run Selector

Select item 30208313510.

NPC2 whole chromatin rep2 16U MNase

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083135

ID:: 302083135

SRA Run Selector

Select item 30208313411.

NPC2 whole chromatin rep2 4U MNase

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083134

ID:: 302083134

SRA Run Selector

Select item 30208313312.

NPC2 whole chromatin rep2 1U MNase

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083133

ID:: 302083133

SRA Run Selector

Select item 30208313213.

NPC2 whole chromatin rep1 64U MNase

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083132

ID:: 302083132

SRA Run Selector

Select item 30208313114.

NPC2 whole chromatin rep1 16U MNase

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083131

ID:: 302083131

SRA Run Selector

Select item 30208313015.

NPC2 whole chromatin rep1 4U MNase

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083130

ID:: 302083130

SRA Run Selector

Select item 30208312916.

NPC2 whole chromatin rep1 1U MNase

Organism:: Mus musculus

Source name:: Embryonic neural progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083129

ID:: 302083129

SRA Run Selector

Select item 30208312817.

NPC1 whole chromatin rep2 64U MNase

Organism:: Mus musculus

Source name:: Neuronal progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083128

ID:: 302083128

SRA Run Selector

Select item 30208312718.

NPC1 whole chromatin rep2 16U MNase

Organism:: Mus musculus

Source name:: Neuronal progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083127

ID:: 302083127

SRA Run Selector

Select item 30208312619.

NPC1 whole chromatin rep2 4U MNase

Organism:: Mus musculus

Source name:: Neuronal progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083126

ID:: 302083126

SRA Run Selector

Select item 30208312520.

NPC1 whole chromatin rep2 1U MNase

Organism:: Mus musculus

Source name:: Neuronal progenitors

Platform:: GPL17021
Series:: GSE78984

Download data: BEDGRAPH

Sample

Accession:: GSM2083125

ID:: 302083125

SRA Run Selector

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