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Items: 8

1.

Integrated Systems Biology Analysis of KSHV Latent Infection Reveals Viral Induction and Reliance on Peroxisome Mediated Lipid Metabolism

(Submitter supplied) Kaposi’s Sarcoma herpesvirus (KSHV), an oncogenic virus, modulates host cell signaling and metabolism to maintain latent infection. To unravel the underlying cellular mechanisms modulated by KSHV, we identified changes in the host proteome, phosphoproteome and transcriptome landscape upon KSHV infection of endothelial cells. A Steiner Forest algorithm was used to integrate proteomic, phosphoproteomic and transcriptomic data with transcriptome based predicted transcription factor activity to identify cellular networks altered by latent KSHV.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16791
6 Samples
Download data: TXT
Series
Accession:
GSE84237
ID:
200084237

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina HiSeq 2500 (Homo sapiens)

Organism:
Homo sapiens
12172 Series
349192 Samples
Download data
Platform
Accession:
GPL16791
ID:
100016791

3.

TIME_KSHV_3

Organism:
Homo sapiens
Source name:
dermal microvasculature
Platform:
GPL16791
Series:
GSE84237
Download data
Sample
Accession:
GSM2229995
ID:
302229995

SRA Run Selector

4.

TIME_KSHV_2

Organism:
Homo sapiens
Source name:
dermal microvasculature
Platform:
GPL16791
Series:
GSE84237
Download data
Sample
Accession:
GSM2229994
ID:
302229994

SRA Run Selector

5.

TIME_KSHV_1

Organism:
Homo sapiens
Source name:
dermal microvasculature
Platform:
GPL16791
Series:
GSE84237
Download data
Sample
Accession:
GSM2229993
ID:
302229993

SRA Run Selector

6.

TIME_Mock_3

Organism:
Homo sapiens
Source name:
dermal microvasculature
Platform:
GPL16791
Series:
GSE84237
Download data
Sample
Accession:
GSM2229992
ID:
302229992

SRA Run Selector

7.

TIME_Mock_2

Organism:
Homo sapiens
Source name:
dermal microvasculature
Platform:
GPL16791
Series:
GSE84237
Download data
Sample
Accession:
GSM2229991
ID:
302229991

SRA Run Selector

8.

TIME_Mock_1

Organism:
Homo sapiens
Source name:
dermal microvasculature
Platform:
GPL16791
Series:
GSE84237
Download data
Sample
Accession:
GSM2229990
ID:
302229990

SRA Run Selector

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db=gds|term=GSE84237[Accession]|query=5|qty=2|blobid=MCID_672635148779bd4d7b2a5c27|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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