GSE8889[Accession] - GEO DataSets - NCBI

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Items: 18

Select item 2000088891.

Genomic Comparison of the O-antigen Biosynthesis Gene Clusters of E. coli O55 Strains Belonging to Three Lineages.

(Submitter supplied) Typical enteropathogenic Escherichia coli (EPEC) O55:H7 is regarded as the closest relative of enterohemorrhagic E. coli (EHEC) O157:H7. Both serotypes usually express the γ1 intimin subclass and trigger actin polymerazation by the Tir-TccP pathway. However, atypical O55:H7 strains capable of triggering actin polymerization via the Tir-Nck pathway have recently been identified. In this study, we investigated the genotypic differences and phylogenetic relationships between typical and atypical O55:H7 strains. more...

Organism:: Escherichia coli

Type:: Genome variation profiling by array

Platform:: GPL5329
16 Samples

Download data: TXT

Series

Accession:: GSE8889

ID:: 200008889

PubMed Similar studies Analyze with GEO2R

Select item 1000053292.

E. coli O157 Sakai oligonucleotide DNA microarray

(Submitter supplied) Oligonucleotide probes were prepared for all the protein-coding genes on the O157 Sakai genome (5,447 genes in total). Principles for the probe design were 60-mer in length and two probes for each gene. As for 542 repeated genes, we prepared a single probe for each repeated gene family. Such probes totaled to 151 probes, each having two or more targets of more than 90% sequence identity on the O157 Sakai genome . more...

Organism:: Escherichia coli

2 Series
72 Samples

Platform

Accession:: GPL5329

ID:: 100005329

Select item 3002252663.

O55:H6 ICC222 replicate 2

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H6 strain ICC222 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225266

ID:: 300225266

Select item 3002252654.

O55:H6 ICC222 replicate 1

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H6 strain ICC222 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225265

ID:: 300225265

Select item 3002252645.

O55:H6 ICC221 replicate 2

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H6 strain ICC221 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225264

ID:: 300225264

Select item 3002252636.

O55:H6 ICC221 replicate 1

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H6 strain ICC221 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225263

ID:: 300225263

Select item 3002252627.

O55:H6 ICC219 replicate 2

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H6 strain ICC219 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225262

ID:: 300225262

Select item 3002252618.

O55:H6 ICC219 replicate 1

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H6 strain ICC219 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225261

ID:: 300225261

Select item 3002252609.

O55:H7 st58 replicate 2

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain st58 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225260

ID:: 300225260

Select item 30022525910.

O55:H7 st58 replicate 1

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain st58 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225259

ID:: 300225259

Select item 30022525811.

O55:H7 WC416 replicate 2

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain WC416 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225258

ID:: 300225258

Select item 30022525712.

O55:H7 WC416 replicate 1

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain WC416 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225257

ID:: 300225257

Select item 30022525613.

O55:H7 WC211 replicate 2

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain WC211 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225256

ID:: 300225256

Select item 30022525514.

O55:H7 WC211 replicate 1

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain WC211 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225255

ID:: 300225255

Select item 30022525415.

O55:H7 st957 replicate 2

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain st957 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225254

ID:: 300225254

Select item 30022525316.

O55:H7 st957 replicate 1

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain st957 (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225253

ID:: 300225253

Select item 30022525217.

O55:H7 TB182A replicate 2

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain TB182A (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225252

ID:: 300225252

Select item 30022525118.

O55:H7 TB182A replicate 1

Organism:: Escherichia coli

Source name:: Genomic DNA from O55:H7 strain TB182A (channel 1) O157 strain Sakai (channel 2)

Platform:: GPL5329
Series:: GSE8889

Download data: TXT

Sample

Accession:: GSM225251

ID:: 300225251

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GSE8889[Accession] (18)
GEO DataSets
retinal dehydrogenase 2 isoform 1 [Homo sapiens]
retinal dehydrogenase 2 isoform 1 [Homo sapiens]
gi|25777724|ref|NP_003879.2|

Protein
Chain UJ, U3 small nucleolar RNA-associated protein 10
Chain UJ, U3 small nucleolar RNA-associated protein 10
gi|2015437676|pdb|6ZQD|UJ

Protein
PREDICTED: Homo sapiens zinc finger protein 222 (ZNF222), transcript variant X1,...
PREDICTED: Homo sapiens zinc finger protein 222 (ZNF222), transcript variant X1, mRNA
gi|2462567406|ref|XM_054321998.1|

Nucleotide
zinc finger protein 222 isoform 2 [Homo sapiens]
zinc finger protein 222 isoform 2 [Homo sapiens]
gi|194018453|ref|NP_037492.2|

Protein

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