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Items: 4

1.

Small RNAs and RNA chaperone Hfq in enterohemorrhagic E. coli

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Escherichia coli; Escherichia coli O157:H7; Escherichia coli str. K-12 substr. MG1655; Escherichia coli O157:H7 str. Sakai
Type:
Expression profiling by array; Expression profiling by high throughput sequencing
4 related Platforms
12 Samples
Download data: GPR, GTF, TXT
Series
Accession:
GSE46120
ID:
200046120

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

UV-crosslinking and high throughput sequencing of cDNAs (CRAC) of the RNA chaperone Hfq in enterohaemorhaggic E. coli

(Submitter supplied) UV-crosslinking and high througput sequencing of cDNAs (CRAC) was used to map the binding sites Hfq in enterohaemorhaggic E. coli (EHEC). Hfq was tagged with a His-FLAG dual affintiy tag and UV crosslinked after growth in the MEM-HEPES media essentailly as per Granneman et al (2009) PNAS. We additionally crosslinked Hfq in non-pathogenic E. coli K12 str. MG1655 grown in LE media. Hfq-RNA complexes were purified and trimmed using RNase A/T1. more...
Organism:
Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL17026 GPL17024 GPL17025
11 Samples
Download data: GTF
Series
Accession:
GSE46118
ID:
200046118

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Illumina Genome Analyzer IIx (Escherichia coli str. K-12 substr. MG1655)

Organism:
Escherichia coli str. K-12 substr. MG1655
11 Series
82 Samples
Download data
Platform
Accession:
GPL17024
ID:
100017024

4.

K12_HTF1

Organism:
Escherichia coli str. K-12 substr. MG1655
Source name:
whole cells_His-FLAG tagged Hfq
Platform:
GPL17024
Series:
GSE46118 GSE46120
Download data: GTF
Sample
Accession:
GSM1123938
ID:
301123938

SRA Run Selector

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db=gds|term=GSM1123938[Accession]|query=24|qty=5|blobid=MCID_6714a7fc84112c3be2571f99|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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