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GEO DataSets

Functional Genomics Studies

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Items: 3

Select item 2000461551.

Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose

(Submitter supplied) We have examined and compared the transcriptome of T. reesei growing on wheat straw and lactose as carbon sources under otherwise similar conditions. Gene expression on wheat straw exceeded that on lactose, and 1619 genes were found to be only induced on wheat straw but not on lactose. They comprised 30 % of the CAZome, but were also enriched in genes associated with phospholipid metabolism, DNA synthesis and repair and iron homeostatis. more...

Organism:: Trichoderma reesei; Trichoderma reesei QM9414

Type:: Expression profiling by array

Platform:: GPL10642
3 Samples

Download data: PAIR, TXT

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Accession:: GSE46155

ID:: 200046155

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000106422.

NimbleGen Trichoderma reesei Whole Genome array v 1.0 [090708_Tres_MS_exp]

(Submitter supplied) NimbleGen custom expression design for Trichoderma reesei (+4 additional control transcripts). Picked 7 probes per gene for 9127 out of 9147 transcripts (9126 exemplars, 10 transcripts with less than 7 probes). Total of 63836 probes. NimbleGen design ID: 10269 NimbleGen design files linked below. Trire2 genome database for T. reesei vs. 2.0, from which the oligonucleotides were designed (http://genome.jgi-psf.org/Trire2/Trire2.home.html) The T. more...