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Items: 3

1.

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

(Submitter supplied) Chromatin accessibility plays a fundamental role in gene regulation. One mechanism to regulate accessibility is nucleosome placement, which is often measured by quantifying protection of DNA from enzymatic digestion. We introduce a metric that uses micrococcal nuclease (MNase) digestion in a novel manner to measure chromatin accessibility by combining information from several digests of increasing depths. more...
Organism:
Homo sapiens; Mus musculus; Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platforms:
GPL16791 GPL17275 GPL17021
74 Samples
Download data: BEDGRAPH
Series
Accession:
GSE78984
ID:
200078984

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2500 (Drosophila melanogaster)

Organism:
Drosophila melanogaster
941 Series
20427 Samples
Download data
Platform
Accession:
GPL17275
ID:
100017275

3.

S2 whole chromatin rep2 100U MNase

Organism:
Drosophila melanogaster
Source name:
S2 cells
Platform:
GPL17275
Series:
GSE78984
Download data: BEDGRAPH
Sample
Accession:
GSM2083083
ID:
302083083

SRA Run Selector

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db=gds|term=GSM2083083[Accession]|query=12|qty=4|blobid=MCID_67314389f6d8ee2ff97f4987|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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