GSM2285351[Accession] - GEO DataSets

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Items: 3

Select item 2000858381.

Affymetrix SNP array data for cell line and tumor genotype alignment

(Submitter supplied) When characterizing novel cell lines, we used SNP genotyping alignment to compare the tumor to the resulting cell line. In order to do this pairwise comparison as each cell model was developed, we added additional data from the GEO database during the normalization step. These data were either tumor DNA or cancer cell line DNA. These samples were not part of a matched pair and so genotype alignment was not reported for these samples. more...

Organism:: Homo sapiens

Type:: Genome variation profiling by genome tiling array; Third-party reanalysis

Platform:: GPL3718
15 Samples

Download data: CEL, TXT

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Accession:: GSE85838

ID:: 200085838

Select item 1000037182.

[Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays). more...