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Items: 3

1.

Comparing gene expression timing and amplitude to delineate the unique pathways of brown and white rot wood-degrading fungi

(Submitter supplied) Wood-degrading fungi play a critical role in global carbon cycling, and their varied mechanisms for deconstruction offer pathways for industrial bioconversion. In this study, we used comparative genomics to isolate upregulation patterns among fungi with brown rot (carbohydrate-selective) or white rot (lignin-degrading) nutritional modes. Specifically, we used whole-transcriptome profiling to compare early, middle, and late decay stages on wood wafers, matching differentially-expressed gene (DEG) patterns with fungal growth and enzyme activities. more...
Organism:
Pleurotus ostreatus; Gloeophyllum trabeum; Trametes versicolor; Postia placenta
Type:
Expression profiling by high throughput sequencing
4 related Platforms
36 Samples
Download data: GTF, TXT, XLSX
Series
Accession:
GSE108189
ID:
200108189

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2.

Illumina HiSeq 2500 (Trametes versicolor)

Organism:
Trametes versicolor
2 Series
12 Samples
Download data
Platform
Accession:
GPL24401
ID:
100024401

3.

Trametes versicolor 15-20 mm_rep3

Organism:
Trametes versicolor
Source name:
white rot decayed wood
Platform:
GPL24401
Series:
GSE108189
Download data
Sample
Accession:
GSM2892088
ID:
302892088

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db=gds|term=GSM2892088[Accession]|query=4|qty=5|blobid=MCID_673c29be5b75c731ae360bf6|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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