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Items: 3

1.

Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum

(Submitter supplied) Background: Human malaria is a major cause of disease and poverty in developing countries being P. falciparum the most deadly of malaria parasites. To successfully develop and adapt within hosts, P. falciparum undergoes drastic switches in chromatin structure and gene expression, but the identity and function of regulatory elements driving these events remain poorly understood. In this work, we performed genome-wide profiling of chromatin accessibility in two culture-adapted subclones and four developmental stages during the intraerythrocytic development by the Assay for Transposase-Accessible Chromatin by sequencing (ATAC-seq). more...
Organism:
Plasmodium falciparum
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL16607
17 Samples
Download data: BED, BEDGRAPH, TXT
Series
Accession:
GSE109599
ID:
200109599
2.

Illumina HiSeq 2000 (Plasmodium falciparum)

Organism:
Plasmodium falciparum
12 Series
340 Samples
Download data
Platform
Accession:
GPL16607
ID:
100016607
3.

1.2B_LRing_ATACseq_replicate2

Organism:
Plasmodium falciparum
Source name:
1.2B_LRing_ATACseq
Platform:
GPL16607
Series:
GSE109599
Download data: BEDGRAPH
Sample
Accession:
GSM2947031
ID:
302947031
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Supplemental Content

db=gds|term=GSM2947031[Accession]|query=2|qty=2|blobid=MCID_6728bfe991da88433d065025|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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