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Items: 4

1.

Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Escherichia coli str. K-12 substr. MG1655
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL24659 GPL26592
30 Samples
Download data: FA, GTF
Series
Accession:
GSE123050
ID:
200123050

PubMed Full text in PMC Similar studies

2.

Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation [CLASH]

(Submitter supplied) By shaping gene expression profiles, small RNAs (sRNAs) enable bacteria to efficiently adapt to changes in their environment. To better understand how Escherichia coli acclimatizes to nutrient availability, we performed UV cross-linking, ligation and sequencing of hybrids (CLASH) to uncover Hfq-associated RNA-RNA interactions at specific growth stages. We demonstrate that Hfq CLASH robustly captures bona fide RNA-RNA interactions identified hundreds of novel sRNA base-pairing interactions, including many sRNA-sRNA interactions and involving 3’UTR-derived sRNAs. more...
Organism:
Escherichia coli str. K-12 substr. MG1655
Type:
Other
Platform:
GPL24659
16 Samples
Download data: TXT
Series
Accession:
GSE123049
ID:
200123049

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Illumina HiSeq 4000 (Escherichia coli str. K-12 substr. MG1655)

Organism:
Escherichia coli str. K-12 substr. MG1655
26 Series
417 Samples
Download data
Platform
Accession:
GPL24659
ID:
100024659

4.

Hfq CLASH replicate 1 Negative Control Sample

Organism:
Escherichia coli str. K-12 substr. MG1655
Source name:
Escherichia coli grown in LB
Platform:
GPL24659
Series:
GSE123049 GSE123050
Download data
Sample
Accession:
GSM3494388
ID:
303494388

SRA Run Selector

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db=gds|term=GSM3494388[Accession]|query=26|qty=2|blobid=MCID_6715af4e84112c3be278fbbe|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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