GSM3688578[Accession] - GEO DataSets - NCBI

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Items: 3

Select item 2001289321.

Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA

(Submitter supplied) We report polysomal RNA sequencing data (RNAseq), small RNAseq, and virus-like-particle (VLP) DNA sequencing (DNAseq) and ChIPseq data. Arabidopsis ddm1 mutants produce LTR retrotransposon transcripts that are processed into 21-22 nt easiRNAs by RNA-Dependent RNA polymerase 6 (RDR6). To test if 21-22 nt easiRNAs regulate transcription, translation and reverse transcription of LTR retrotransposons, we compared ddm1 and ddm1rdr6 in polysomal RNAseq, VLP DNAseq and ChIPseq data. more...

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing

4 related Platforms
48 Samples

Download data: BEDGRAPH, BW, TXT, VCF

Series

Accession:: GSE128932

ID:: 200128932

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000132222.

Illumina HiSeq 2000 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

781 Series
11076 Samples

Platform

Accession:: GPL13222

ID:: 100013222

Select item 3036885783.

Total polysomal RNA ddm1rdr6 Rep 2

Organism:: Arabidopsis thaliana

Source name:: Inflorescence tissues

Platform:: GPL13222
Series:: GSE128932

Download data: TXT

Sample

Accession:: GSM3688578

ID:: 303688578

SRA Run Selector

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