GEO DataSets

(Submitter supplied) Whole genome sequencing, particularly in fungi, has progressed at a tremendous rate. More difficult, however, is experimental testing of the inferences about gene function that can be drawn from comparative sequence analysis alone. We present a genome-wide functional characterization of a sequenced but experimentally understudied budding yeast, Saccharomyces bayanus var uvarum (henceforth referred to as S. more...

Organism:

Saccharomyces cerevisiae; Saccharomyces bayanus

Type:

Expression profiling by array; Genome variation profiling by array

8 related Platforms

360 Samples

Download data: GPR

(Submitter supplied) Genome-scale datasets have been used extensively in model organisms to screen for specific candidates or to predict functions for uncharacterized genes. However, despite the availability of extensive knowledge in model organisms, the planning of genome-scale experiments in poorly studied species is still based on the intuition of experts or heuristic trials. We propose that computational and systematic approaches can be applied to drive the experiment planning process in poorly studied species based on available data and knowledge in closely related model organisms. more...

Organism:

Saccharomyces cerevisiae; Saccharomyces bayanus

Type:

Expression profiling by array

7 related Platforms

343 Samples

Download data: GPR

(Submitter supplied) SBSC print, a multi-organism print. Protocol: The following parameters were used to manufacture the printed array named 20080530MD_PMC Printer: Arrayer 250A Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip Spot Columns per Sector: 16 Spot Rows per Sector: 17 Column Spacing: 235 Row Spacing: 242 Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right) Printhead Dip Dynamics: top to bottom, right to left Sector Spotting Dynamics: left to right, top to bottom Print Replicate Spots: 1 Number of Slides: 254 Plates used in this print, in order. more...

Organism:

Saccharomyces bayanus; Saccharomyces cerevisiae

2 Series

30 Samples

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