GEO DataSets

(Submitter supplied) Purpose: Examining the transcriptome of human gut bacteria that grow on seaweed polysaccharides as a sole carbon source Methods: Strains were grown on 5 mg/ml seaweed polysaccharides (carrageenan, agarose and/or poprhyran respective to strain) or galactose as a sole carbon source in vitro. Fold change was calculated as seaweed polysaccharide over galactose with n=2 biological replicates. Once cells reached an optical density corresponding to mid-log phase growth, RNA was isolated and rRNA depleted. more...

Organism:

Bacteroides thetaiotaomicron; Faecalicatena contorta; Faecalicatena fissicatena; Bacteroides xylanisolvens

Type:

Expression profiling by high throughput sequencing

4 related Platforms

24 Samples

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