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Items: 3

1.

RAINBOW-seq to capture the spatial transcriptome of bacterial biofilm

(Submitter supplied) We developed a spatially resolved method to profile the spatial transcriptome of biofilm. In detail, we used fluorescent dyes to label the different regions of biofilm cultured in a microfluidic chip. After staining, the bacterial cells in biofilm were sorted into relevant bins according to their spatial information marked by the fluorescent pattern. Finally, miniBac-seq (RNA-seq) method was applied to capture the transcriptome of each bin.
Organism:
Escherichia coli BW25113
Type:
Expression profiling by high throughput sequencing
Platform:
GPL27123
38 Samples
Download data: TXT
Series
Accession:
GSE197541
ID:
200197541

PubMed Similar studies

2.

Illumina NovaSeq 6000 (Escherichia coli BW25113)

Organism:
Escherichia coli BW25113
6 Series
168 Samples
Download data
Platform
Accession:
GPL27123
ID:
100027123

3.

b5_1002um

Organism:
Escherichia coli BW25113
Source name:
Spatial transcriptome of the layer 1002 micrometers away from biofilm edge in biofilm 5
Platform:
GPL27123
Series:
GSE197541
Download data
Sample
Accession:
GSM5920205
ID:
305920205

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db=gds|term=GSM5920205[Accession]|query=7|qty=2|blobid=MCID_6739c03bc743ad79f741892e|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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