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Items: 3

1.

Identifying suitable experimental designs to determining differentially expressed genes and benchmark doses from transcriptomic dose-response studies in zebrafish embryos

(Submitter supplied) To identify suitable experimental designsfor toxicology experiments (i.e., sample size, pool size, number of biological replicates, and number of doses), we exposed zebrafish embryos to 0.1% dimethyl sulfoxide for 4-120 hours post fertilization. We then created 96 samples to examine the impact of pool size comprised of 1, 5, 10, and 20 zebrafish embryos each (n = 24). From these, total RNA extraction was extracted and transcriptomic analyses were done using the TempO-Seq S1500+ Surrogate Assay platform. more...
Organism:
Danio rerio
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30614
96 Samples
Download data: CSV
Series
Accession:
GSE230213
ID:
200230213
2.

NextSeq 2000 (Danio rerio)

Platform
Accession:
GPL30614
ID:
100030614
3.

P10_9 [Z10_B2_1_S49]

Organism:
Danio rerio
Source name:
whole_embryo
Platform:
GPL30614
Series:
GSE230213
Download data
Sample
Accession:
GSM7196438
ID:
307196438
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