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Items: 4

1.

Widespread priming of transcriptional regulatory elements by incipient accessibility or Pol II pause in early embryos of the sea urchin Strongylocentrotus purpuratus

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Strongylocentrotus purpuratus
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other; Third-party reanalysis
Platforms:
GPL20965 GPL23218
32 Samples
Download data: BW, NARROWPEAK
Series
Accession:
GSE234143
ID:
200234143

2.

Accessibility and activity of transcriptional regulatory elements during sea urchin embryogenesis and differentiation [ATAC-seq]

(Submitter supplied) Transcriptional regulatory elements (TREs) are the primary nodes of the gene regulatory networks that control development. TREs are identified by PRO-seq and their accessibility by ATAC-seq during sea urchin embryonic development and differentiation. Our analysis identifies surprisingly early accessibility in 4-cell cleavage embryo TREs that is not necessarily followed by subsequent transcription, and an excess of ATAC-seq peaks transcriptionally disengaged during the stages analyzed. more...
Organism:
Strongylocentrotus purpuratus
Type:
Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis
Platforms:
GPL23218 GPL20965
15 Samples
Download data: BED, BW, NARROWPEAK
Series
Accession:
GSE234139
ID:
200234139

3.

Illumina NextSeq 500 (Strongylocentrotus purpuratus)

Organism:
Strongylocentrotus purpuratus
8 Series
39 Samples
Download data
Platform
Accession:
GPL23218
ID:
100023218

4.

ATAC_8h_Bioreplicate 1

Organism:
Strongylocentrotus purpuratus
Source name:
8 hour embryos
Platform:
GPL23218
Series:
GSE234139 GSE234143
Download data: NARROWPEAK
Sample
Accession:
GSM7446668
ID:
307446668

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db=gds|term=GSM7446668[Accession]|query=5|qty=2|blobid=MCID_6707f1ec475a635e8576fcac|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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