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Items: 3

1.

3D genome topology distinguishes molecular subgroups of medulloblastoma

(Submitter supplied) Four main medulloblastoma (MB) molecular subtypes have been identified based on transcriptional, DNA methylation and genetic profiles. However, it is currently not known whether MB subtypes have their own specific 3D genome architecture. Hi-C maps were globally stable across MB subtypes. However, among the 3D genome features we tested, boundary strengths of topologically associating domains (TADs) were the best at classifying MB samples – including Group 3 and Group 4 specimens - according to their known molecular subtypes. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL20795 GPL16791
55 Samples
Download data: BEDGRAPH, BEDPE, BW, HIC, TSV, WIG
Series
Accession:
GSE246125
ID:
200246125

2.

HiSeq X Ten (Homo sapiens)

Organism:
Homo sapiens
2074 Series
35702 Samples
Download data
Platform
Accession:
GPL20795
ID:
100020795

3.

MB3662-hic

Organism:
Homo sapiens
Source name:
brain
Platform:
GPL20795
Series:
GSE246125
Download data: BEDGRAPH, BEDPE, HIC, WIG
Sample
Accession:
GSM7856786
ID:
307856786

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db=gds|term=GSM7856786[Accession]|query=2|qty=2|blobid=MCID_6725e1da85c9bf64ec38ba3c|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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