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Items: 3

1.

CUT&Tag and BioCUT&Tag enables investigation of the AT-rich and dynamic epigenome of Plasmodium falciparum from low input samples

(Submitter supplied) This study aimed to adapt CUT&Tag to Plasmodium falciparum samples as an efficient and sensitive alternative to classical ChIP-sequencing. We compare H3K9me3 and HP1 CUT&Tag with ChIP-seq datasets, showing successful establishment of CUT&Tag in P. falciparum. Next we aimed to scale down required input material for our CUT&Tag reactions and generated high-quality HP1 tracks with as little as 10.000 nuclei. more...
Organism:
Plasmodium falciparum
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL32020
18 Samples
Download data: BEDGRAPH
Series
Accession:
GSE270104
ID:
200270104

2.

NextSeq 2000 (Plasmodium falciparum)

Organism:
Plasmodium falciparum
3 Series
52 Samples
Download data
Platform
Accession:
GPL32020
ID:
100032020

3.

3D7-HP1-FKBP, Biotin, DiBioCUT&Tag

Organism:
Plasmodium falciparum
Source name:
3D7 HP1-2xFKBP-GFP-2A-NeoR / mCherry-FRB-miniTurbo
Platform:
GPL32020
Series:
GSE270104
Download data: BEDGRAPH
Sample
Accession:
GSM8334540
ID:
308334540

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db=gds|term=GSM8334540[Accession]|query=10|qty=2|blobid=MCID_67090a72c7d3ca20d54bb2e5|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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