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Items: 4

1.

Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL13222 GPL11221
20 Samples
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Series
Accession:
GSE39217
ID:
200039217
2.

Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis [ChIP-Seq]

(Submitter supplied) Dark-grown seedlings exhibit skotomorphogenic development. Genetic and molecular evidence indicates that a quartet of Arabidopsis Phytochrome (phy)-Interacting bHLH Factors (PIF1, 3, 4 and 5) are critically necessary to maintaining this developmental state, and that light activation of phy induces a switch to photomorphogenic development by inducing rapid degradation of the PIFs. Here, using combined ChIP-seq and RNA-seq analyses, we have identified genes that are direct targets of PIF3 transcriptional regulation, and we provide evidence that the quartet collectively regulate these genes by shared, direct binding to the target promoters in promoting skotomorphogenesis.
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11221
8 Samples
Download data: XLSX
Series
Accession:
GSE39215
ID:
200039215
3.

Illumina Genome Analyzer IIx (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
109 Series
2765 Samples
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Platform
Accession:
GPL11221
ID:
100011221
4.

P3M-ChIP-3

Organism:
Arabidopsis thaliana
Source name:
whole seedlings
Platform:
GPL11221
Series:
GSE39215 GSE39217
Download data
Sample
Accession:
GSM958271
ID:
300958271
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Supplemental Content

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