txid1001989[Organism:noexp] - GEO DataSets - NCBI

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Items: 14

Select item 2001970841.

Genome-wide identification of genes critical for in vivo fitness of porcine extraintestinal pathogenic Escherichia coli by using transposon-directed insertion site sequencing

(Submitter supplied) This study was aimed to do genome-wide identification of fitness factors of ExPEC using an mouse infection model. A transposon (Tn) mutagenesis library (input) containing insertions of 72% of the total chromomose encoded genes was used to infect mouse. Bacteria were then recovered from the brain, lung, and spleen (output libraries) at 12 hours post infection. The genomic DNA was extracted from the input and the output libraries. more...

Organism:: Escherichia coli PCN033

Type:: Other

Platform:: GPL31960
12 Samples

Download data: TXT

Series

Accession:: GSE197084

ID:: 200197084

PubMed Full text in PMC Similar studies

Select item 1000319602.

Illumina NovaSeq 6000 (Escherichia coli PCN033)

Organism:: Escherichia coli PCN033

1 Series
12 Samples

Platform

Accession:: GPL31960

ID:: 100031960

Select item 3059082253.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908225

ID:: 305908225

SRA Run Selector

Select item 3059082244.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908224

ID:: 305908224

SRA Run Selector

Select item 3059082235.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908223

ID:: 305908223

SRA Run Selector

Select item 3059082226.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908222

ID:: 305908222

SRA Run Selector

Select item 3059082217.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908221

ID:: 305908221

SRA Run Selector

Select item 3059082208.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908220

ID:: 305908220

SRA Run Selector

Select item 3059082199.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908219

ID:: 305908219

SRA Run Selector

Select item 30590821810.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908218

ID:: 305908218

SRA Run Selector

Select item 30590821711.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908217

ID:: 305908217

SRA Run Selector

Select item 30590821612.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908216

ID:: 305908216

SRA Run Selector

Select item 30590821513.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908215

ID:: 305908215

SRA Run Selector

Select item 30590821414.

Organism:: Escherichia coli PCN033

Source name:: Porcine extraintestinal pathogenic Escherichia coli (ExPEC)

Platform:: GPL31960
Series:: GSE197084

Download data: TXT

Sample

Accession:: GSM5908214

ID:: 305908214

SRA Run Selector

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txid1001989[Organism:noexp] (14)
GEO DataSets
Taxonomy Links for Nucleotide (Select 646674730) (1)
Taxonomy
MAG: hypothetical protein [Bacteriophage sp.]
MAG: hypothetical protein [Bacteriophage sp.]
gi|2295387562|gb|UWI15955.1|

Protein
MAG: Bacteriophage sp. isolate 4272_126203, partial genome
MAG: Bacteriophage sp. isolate 4272_126203, partial genome
gi|2293622331|gb|OP072891.1|

Nucleotide
MAG: Bacteriophage sp. isolate 3390_78123, partial genome
MAG: Bacteriophage sp. isolate 3390_78123, partial genome
gi|2293601694|gb|OP072611.1|

Nucleotide

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