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Functional Genomics Studies

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Select item 2000869601.

A time series of autumn senescence leaves from populus tremula

(Submitter supplied) A gene expression analysis of the changes in in popolulus tremula during the autumn sensencece. Leaves were analyzed from late summer and late into autumn. Cytokinins are plant hormones that typically block or delay leaf senescence. We profiled 34 different cytokinins/cytokinin metabolites (including precursors, conjugates and degradation products) in leaves of a free-growing mature aspen (Populus tremula) before and after the initiation of autumnal senescence over three consecutive years. more...

Organism:: Populus tremula

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22434
16 Samples

Download data: TXT, XLSX

Series

Accession:: GSE86960

ID:: 200086960

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000515902.

Differential expression of miRNAs in Brassica napus root following infection with Plasmodiophora brassicae

(Submitter supplied) Canola (oilseed rape, Brassica napus L.), is susceptible to infection by the biotrophic protist Plasmodiophora brassicae, the causal agent of clubroot. To understand the roles of microRNAs (miRNAs) during the post-transcriptional regulation of disease initiation and progression, we have characterized the changes in miRNA expression profiles in canola roots during clubroot disease development and have compared these to uninfected roots. more...

Organism:: Physcomitrium patens; Persea americana; Populus trichocarpa x Populus deltoides; Malus domestica; Nicotiana sylvestris; Nicotiana tabacum; Petunia x hybrida; Oryza sativa; Lolium arundinaceum; Lotus japonicus; Cenchrus ciliaris; Populus tremula x Populus tremuloides; Nasturtium officinale; Picea sitchensis; Brassica napus; Lupinus luteus; Phaseolus coccineus; Manihot esculenta; Ricinus communis; Oryza brachyantha; Cenchrus americanus; Phleum pratense; Panicum virgatum; Nuphar advena; Pinus taeda; Liriodendron tulipifera; Phaseolus vulgaris; Ipomoea batatas; Lactuca sativa; Oryza rufipogon; Oryza nivara; Sorghum bicolor; Rorippa indica; Prunus salicina; Populus tremula; Malcolmia maritima; Picea glauca; Populus tremuloides; Populus trichocarpa; Prunus persica; Medicago truncatula; Nicotiana benthamiana; Hordeum vulgare; Ipomoea nil; Prunus armeniaca; Peridictyon sanctum; Oryza barthii; Hordeum vulgare subsp. vulgare; Oenocarpus bataua

Type:: Non-coding RNA profiling by array

Platform:: GPL17805
4 Samples

Download data: TXT

Series

Accession:: GSE51590

ID:: 200051590

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000462193.

Populus tremula (European aspen) shows no evidence of sexual dimorphism in gene expression, phenotype, secondary defence or herbivory

(Submitter supplied) We profiled gene expression and phenotypic traits in Populus tremula to examine evidence of sexual dimorphism and sex biased gene expression.

Organism:: Populus trichocarpa; Populus tremula

Type:: Expression profiling by array

Platform:: GPL17041
20 Samples

Download data: GPR

Series

Accession:: GSE46219

ID:: 200046219

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000192974.

Transcriptomic response to aluminum stress in roots of aspen (Populus tremula L.)

(Submitter supplied) Background Ionic aluminum (mainly Al3+) is rhizotoxic and can be present in acid soils at concentrations high enough to inhibit root growth. Many forest tree species grow naturally in acid soils and often tolerate high concentrations of Al. Previously, we have shown that aspen (Populus tremula) releases citrate and oxalate from roots in response to Al exposure. To obtain further insights into the root responses of aspen to Al, we investigated root gene expression at Al conditions that inhibit root growth. more...

Organism:: Populus sp.; Populus tremula

Type:: Expression profiling by array

Platform:: GPL4359
18 Samples

Download data: CEL

Series

Accession:: GSE19297

ID:: 200019297

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000224345.

Illumina HiSeq 2000 (Populus tremula)

Organism:: Populus tremula

1 Series
16 Samples

Platform

Accession:: GPL22434

ID:: 100022434

Select item 1000178056.

LC_MRA-1038_miRPlants_15

(Submitter supplied) plant miRNA microarray with 100% coverage of mature plant miRNAs listed in miRBase version 15.0. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...

Organism:: Physcomitrium patens; Picea glauca; Picea sitchensis; Pinus taeda; Liriodendron tulipifera; Persea americana; Populus tremuloides; Populus trichocarpa; Populus trichocarpa x Populus deltoides; Malus domestica; Prunus persica; Lupinus luteus; Medicago truncatula; Phaseolus vulgaris; Phaseolus coccineus; Manihot esculenta; Ricinus communis; Nicotiana sylvestris; Nicotiana tabacum; Nicotiana benthamiana; Petunia x hybrida; Ipomoea batatas; Lactuca sativa; Hordeum vulgare; Oryza rufipogon; Oryza sativa; Oryza brachyantha; Oryza nivara; Cenchrus americanus; Sorghum bicolor; Lolium arundinaceum; Phleum pratense; Lotus japonicus; Cenchrus ciliaris; Ipomoea nil; Prunus armeniaca; Peridictyon sanctum; Panicum virgatum; Populus tremula x Populus tremuloides; Rorippa indica; Oryza barthii; Nasturtium officinale; Nuphar advena; Prunus salicina; Hordeum vulgare subsp. vulgare; Populus tremula; Oenocarpus bataua; Malcolmia maritima

1 Series
4 Samples

Platform

Accession:: GPL17805

ID:: 100017805

Select item 3023110317.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311031

ID:: 302311031

SRA Run Selector

Select item 3023110308.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311030

ID:: 302311030

SRA Run Selector

Select item 3023110299.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311029

ID:: 302311029

SRA Run Selector

Select item 30231102810.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311028

ID:: 302311028

SRA Run Selector

Select item 30231102711.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311027

ID:: 302311027

SRA Run Selector

Select item 30231102612.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311026

ID:: 302311026

SRA Run Selector

Select item 30231102513.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311025

ID:: 302311025

SRA Run Selector

Select item 30231102414.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311024

ID:: 302311024

SRA Run Selector

Select item 30231102315.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311023

ID:: 302311023

SRA Run Selector

Select item 30231102216.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311022

ID:: 302311022

SRA Run Selector

Select item 30231102117.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311021

ID:: 302311021

SRA Run Selector

Select item 30231102018.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311020

ID:: 302311020

SRA Run Selector

Select item 30231101919.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311019

ID:: 302311019

SRA Run Selector

Select item 30231101820.

Organism:: Populus tremula

Source name:: Leaf

Platform:: GPL22434
Series:: GSE86960

Download data: TXT

Sample

Accession:: GSM2311018

ID:: 302311018

SRA Run Selector

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txid113636[Organism:noexp] (60)
GEO DataSets
Nakaseomyces glabratus 5.8S ribosomal RNA (RDN58-1.5), rRNA
Nakaseomyces glabratus 5.8S ribosomal RNA (RDN58-1.5), rRNA
gi|2741449036|ref|XR_010605612.1|

Nucleotide
Nakaseomyces glabratus 18S ribosomal RNA (RDN18-1.8), rRNA
Nakaseomyces glabratus 18S ribosomal RNA (RDN18-1.8), rRNA
gi|2741449065|ref|XR_010605625.1|

Nucleotide
protein Aster-A isoform X3 [Homo sapiens]
protein Aster-A isoform X3 [Homo sapiens]
gi|1034608656|ref|XP_016882524.1|

Protein

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