txid130081[Organism:noexp] - GEO DataSets - NCBI

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Select item 2001188901.

Cold acclimation of the thermoacidophilic red alga Galdieria sulphuraria - changes in gene expression and involvement of horizontally acquired genes

(Submitter supplied) Purpose: We aimed at i) obtaining insight into how a thermophile organism reacts to cold stress, and ii) evaluating the impact of HGT candidates on the acclimation process to temperature decrease. Methods: The experimental design followed a temperature shift timeline: after two weeks of cultivation at 42°C, constant illumination (90 μE) and constant shaking (160 rpm) in photoautotrophic conditions the first sampling took place (Hot_T48_1) and the cultures of G.sulphuraria were swiftly moved to 28°C ( = cold temperature). more...

Organism:: Galdieria sulphuraria

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22605
25 Samples

Download data: XLSX

Series

Accession:: GSE118890

ID:: 200118890

PubMed Similar studies SRA Run Selector

Select item 2000891692.

Selection for transcript diversity in the extremophile Galdieria sulphuraria results in retention of the splicing machinery

(Submitter supplied) Purpose: Red algae show two putative phases of massive genome reduction. RNA-splicing represents an important form of post-transcriptional regulation in eukaryotes. This process generates increased transcriptome and proteome diversity via alternative splicing that can maximize the DNA-encoded genetic diversity embedded within genomes. Why would Spliceosomal Machinery genes and a relatively more complex intron-exon structure be preserved in the compact Galdieria genome? The answer may lie in the fact that RNA-splicing represents an important form of post-transcriptional regulation in eukaryotes. more...

Organism:: Galdieria sulphuraria

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22605
9 Samples

Download data: TXT

Series

Accession:: GSE89169

ID:: 200089169

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000226053.

Illumina HiSeq 2000 (Galdieria sulphuraria)

Organism:: Galdieria sulphuraria

2 Series
34 Samples

Platform

Accession:: GPL22605

ID:: 100022605

Select item 3033498504.

Cold_T48_10_Rep C

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate C - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349850

ID:: 303349850

SRA Run Selector

Select item 3033498495.

Cold_T48_10_Rep A

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate A - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349849

ID:: 303349849

SRA Run Selector

Select item 3033498486.

Cold_T12_9_Rep C

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate C - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349848

ID:: 303349848

SRA Run Selector

Select item 3033498477.

Cold_T12_9_Rep B

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate B - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349847

ID:: 303349847

SRA Run Selector

Select item 3033498468.

Cold_T12_9_Rep A

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate A - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349846

ID:: 303349846

SRA Run Selector

Select item 3033498459.

Cold_T3_8_Rep C

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate C - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349845

ID:: 303349845

SRA Run Selector

Select item 30334984410.

Cold_T3_8_Rep B

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate B - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349844

ID:: 303349844

SRA Run Selector

Select item 30334984311.

Cold_T3_8_Rep A

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate A - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349843

ID:: 303349843

SRA Run Selector

Select item 30334984212.

Hot_T48_7_Rep C

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate C - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349842

ID:: 303349842

SRA Run Selector

Select item 30334984113.

Hot_T48_7_Rep A

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate A - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349841

ID:: 303349841

SRA Run Selector

Select item 30334984014.

Hot_T12_6_Rep B

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate B - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349840

ID:: 303349840

SRA Run Selector

Select item 30334983915.

Hot_T12_6_Rep A

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate A - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349839

ID:: 303349839

SRA Run Selector

Select item 30334983816.

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate C - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349838

ID:: 303349838

SRA Run Selector

Select item 30334983717.

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate A - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349837

ID:: 303349837

SRA Run Selector

Select item 30334983618.

Cold_T48_4_Rep C

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate C - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349836

ID:: 303349836

SRA Run Selector

Select item 30334983519.

Cold_T48_4_Rep B

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate B - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349835

ID:: 303349835

SRA Run Selector

Select item 30334983420.

Cold_T48_4_Rep A

Organism:: Galdieria sulphuraria

Source name:: Batch Culture - Biological Replicate A - Autorophic - 2xAllen Medium

Platform:: GPL22605
Series:: GSE118890

Sample

Accession:: GSM3349834

ID:: 303349834

SRA Run Selector

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