txid147471[Organism:exp] - GEO DataSets - NCBI

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Items: 17

Select item 2000473421.

ChIP-seq in oat-maize additional lines using CenH3 antibody

(Submitter supplied) Many existing centromeres may have originated as neocentromeres that activated de novo from non-centromeric regions. However, the evolutionary path from a neocentromere to a mature centromere has been elusive. Here we analyzed the centromeres of six chromosomes that were transferred from maize into oat as the result of an inter-species cross. Centromere size and location were assayed by chromatin immunoprecipitation for the histone variant CENH3, which is a defining feature of functional centromeres. more...

Organism:: Avena sativa/Zea mays addition line

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL17195 GPL17196
14 Samples

Download data: GFF, TXT

Series

Accession:: GSE47342

ID:: 200047342

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000171962.

Illumina HiSeq 2000 (Avena sativa/Zea mays addition line)

Organism:: Avena sativa/Zea mays addition line

1 Series
5 Samples

Platform

Accession:: GPL17196

ID:: 100017196

Select item 1000171953.

Illumina Genome Analyzer II (Avena sativa/Zea mays addition line)

Organism:: Avena sativa/Zea mays addition line

1 Series
9 Samples

Platform

Accession:: GPL17195

ID:: 100017195

Select item 3012124984.

OMA10.26 CenH3 ChIP-seq

Organism:: Avena sativa/Zea mays addition line

Source name:: OMA10.26 CenH3 ChIP-seq

Platform:: GPL17196
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1212498

ID:: 301212498

SRA Run Selector

Select item 3012124975.

OMA9.41 CenH3 ChIP-seq

Organism:: Avena sativa/Zea mays addition line

Source name:: OMA9.41 CenH3 ChIP-seq

Platform:: GPL17196
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1212497

ID:: 301212497

SRA Run Selector

Select item 3012124966.

OMA8.05 CenH3 ChIP-seq rep2

Organism:: Avena sativa/Zea mays addition line

Source name:: OMA8.05 CenH3 ChIP-seq

Platform:: GPL17196
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1212496

ID:: 301212496

SRA Run Selector

Select item 3012124957.

OMA8.05 CenH3 ChIP-seq rep1

Organism:: Avena sativa/Zea mays addition line

Source name:: OMA8.05 CenH3 ChIP-seq

Platform:: GPL17196
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1212495

ID:: 301212495

SRA Run Selector

Select item 3011475738.

OMA2.51 CenH3 ChIP-seq

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17196
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1147573

ID:: 301147573

SRA Run Selector

Select item 3011475799.

OMA3.01 RNA-seq replicate 2

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: TXT

Sample

Accession:: GSM1147579

ID:: 301147579

SRA Run Selector

Select item 30114757810.

OMA3.01 RNA-seq replicate 1

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: TXT

Sample

Accession:: GSM1147578

ID:: 301147578

SRA Run Selector

Select item 30114757711.

neoM3 RNA-seq replicate 2

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: TXT

Sample

Accession:: GSM1147577

ID:: 301147577

SRA Run Selector

Select item 30114757612.

neoM3 RNA-seq replicate 1

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: TXT

Sample

Accession:: GSM1147576

ID:: 301147576

SRA Run Selector

Select item 30114757513.

OMA6.34 CenH3 ChIP-seq

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1147575

ID:: 301147575

SRA Run Selector

Select item 30114757414.

OMA5.60 CenH3 ChIP-seq

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1147574

ID:: 301147574

SRA Run Selector

Select item 30114757215.

OMA1.36 CenH3 ChIP-seq

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1147572

ID:: 301147572

SRA Run Selector

Select item 30114757116.

OMA3.01 CenH3 ChIP-seq

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1147571

ID:: 301147571

SRA Run Selector

Select item 30114757017.

neoM3 CenH3 ChIP-seq

Organism:: Avena sativa/Zea mays addition line

Source name:: young leaf tissues

Platform:: GPL17195
Series:: GSE47342

Download data: GFF

Sample

Accession:: GSM1147570

ID:: 301147570

SRA Run Selector

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